Variant report

Variant	rs2912334
Chromosome Location	chr18:28883507-28883508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10468901	0.88[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs11081687	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs2114270	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2303465	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs2912316	0.84[LWK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2912335	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4399610	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs60538176	0.81[AMR][1000 genomes]
rs6506917	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7229263	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7236327	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs8095423	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs930963	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs977434	0.81[CEU][hapmap]
rs9949912	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9952617	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9953985	0.81[ASN][1000 genomes]
rs9965256	0.84[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28877000-28883600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr18:28880400-28884600	Enhancers	HMEC	breast
3	chr18:28880600-28884200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr18:28880600-28884600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr18:28880600-28885200	Enhancers	NHEK	skin
6	chr18:28880800-28883600	Weak transcription	Placenta	Placenta
7	chr18:28882000-28883600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr18:28882000-28883600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr18:28882000-28883600	Weak transcription	Left Ventricle	heart
10	chr18:28882000-28883600	Weak transcription	NH-A	brain
11	chr18:28882000-28884800	Enhancers	HUVEC	blood vessel
12	chr18:28883000-28884600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr18:28883400-28884000	Enhancers	Fetal Intestine Large	intestine
14	chr18:28883400-28884600	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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