Variant report

Variant	rs2912340
Chromosome Location	chr18:28866280-28866281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11664218	0.91[ASN][1000 genomes]
rs11664391	0.81[ASN][1000 genomes]
rs11665531	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16961644	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16961651	0.81[ASN][1000 genomes]
rs16961653	0.81[ASN][1000 genomes]
rs2912336	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2919984	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2919985	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2919988	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2919989	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs41326652	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7236477	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3422577	chr18:28862003-28881811	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28859000-28867600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:28861200-28869400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:28862600-28867600	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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