Variant report

Variant	rs2919703
Chromosome Location	chr11:70981348-70981349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70980062..70982454-chr11:70995115..70997170,2	MCF-7	breast:
2	chr11:70980394..70983033-chr11:70991372..70994451,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2002704	1.00[EUR][1000 genomes]
rs2919702	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919704	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919705	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3020038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133512	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4077232	1.00[EUR][1000 genomes]
rs55796382	1.00[EUR][1000 genomes]
rs56754859	1.00[EUR][1000 genomes]
rs73532310	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70978600-70981600	Enhancers	Duodenum Mucosa	Duodenum
2	chr11:70978800-70981600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:70979200-70981400	Enhancers	Fetal Intestine Small	intestine
4	chr11:70979600-70981600	Enhancers	A549	lung
5	chr11:70979800-70981600	Enhancers	Fetal Intestine Large	intestine
6	chr11:70980000-70981400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr11:70980000-70981600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:70980600-70981400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:70980600-70981400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:70980600-70981400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:70980600-70981400	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr11:70980600-70981400	Enhancers	Hela-S3	cervix
13	chr11:70980600-70981400	Flanking Active TSS	HepG2	liver
14	chr11:70980600-70981400	Enhancers	Osteobl	bone
15	chr11:70980600-70981600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:70980600-70981600	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:70980600-70981600	Enhancers	HSMMtube	muscle
18	chr11:70980600-70981800	Enhancers	HSMM	muscle
19	chr11:70980800-70981400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:70980800-70981600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:70980800-70981600	Enhancers	Stomach Mucosa	stomach
22	chr11:70981000-70981400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:70981000-70981400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:70981000-70981600	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr11:70981000-70981600	Enhancers	NH-A	brain
26	chr11:70981200-70981400	Enhancers	Colonic Mucosa	Colon
27	chr11:70981200-70981600	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr11:70981200-70991000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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