Variant report

Variant	rs2919724
Chromosome Location	chr11:70961088-70961089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:70959067..70961729-chr11:70970805..70973503,2	K562	blood:
2	chr11:70959273..70962056-chr11:70997227..71000001,2	MCF-7	breast:
3	chr11:70912656..70917143-chr11:70958858..70961593,4	MCF-7	breast:
4	chr11:70950069..70955056-chr11:70960024..70964626,8	MCF-7	breast:
5	chr11:70917604..70920441-chr11:70959224..70961186,2	MCF-7	breast:
6	chr11:70907031..70909335-chr11:70960329..70962962,2	MCF-7	breast:
7	chr11:70959622..70962831-chr11:70962933..70966518,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162105	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1004872	1.00[ASN][1000 genomes]
rs11603698	1.00[CEU][hapmap]
rs1372108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1985681	1.00[ASN][1000 genomes]
rs2919720	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2919726	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919727	1.00[ASN][1000 genomes]
rs2919728	1.00[ASN][1000 genomes]
rs2919729	1.00[ASN][1000 genomes]
rs2919740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2919742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3020024	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3020025	1.00[ASN][1000 genomes]
rs3020027	1.00[ASN][1000 genomes]
rs3020028	1.00[ASN][1000 genomes]
rs3020032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133512	1.00[CEU][hapmap]
rs4078937	0.89[ASN][1000 genomes]
rs60796828	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70946400-70961600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:70952800-70961200	Weak transcription	HSMM	muscle
3	chr11:70958200-70961200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:70958400-70961400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:70958400-70961600	Enhancers	Liver	Liver
6	chr11:70958600-70961400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr11:70958600-70961400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:70958800-70961600	Bivalent Enhancer	Placenta	Placenta
9	chr11:70959000-70962200	Weak transcription	Right Atrium	heart
10	chr11:70959200-70961200	Weak transcription	A549	lung
11	chr11:70959200-70962000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:70959400-70961400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:70959400-70961400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:70959400-70961400	Weak transcription	Pancreas	Pancrea
15	chr11:70959400-70962200	Weak transcription	Gastric	stomach
16	chr11:70959800-70961400	Flanking Active TSS	HepG2	liver
17	chr11:70960200-70962200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr11:70960400-70961400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:70960400-70961400	Enhancers	Fetal Intestine Small	intestine
20	chr11:70960600-70961400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
21	chr11:70960600-70961400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
22	chr11:70960600-70961600	Bivalent Enhancer	Stomach Mucosa	stomach
23	chr11:70960800-70961400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr11:70961000-70961200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
25	chr11:70961000-70961200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
26	chr11:70961000-70961200	Bivalent Enhancer	Fetal Lung	lung
27	chr11:70961000-70961400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
28	chr11:70961000-70961400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
29	chr11:70961000-70961800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:70961000-70962400	Bivalent Enhancer	Primary B cells from peripheral blood	blood

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