Variant report

Variant	rs2919731
Chromosome Location	chr11:70935592-70935593
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70933793..70936312-chr11:70940649..70942541,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1004872	0.87[EUR][1000 genomes]
rs1985681	1.00[EUR][1000 genomes]
rs2919727	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2919728	1.00[EUR][1000 genomes]
rs2919729	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3020024	1.00[EUR][1000 genomes]
rs3020025	1.00[EUR][1000 genomes]
rs3020027	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3020028	1.00[EUR][1000 genomes]
rs60796828	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70924600-70937200	Weak transcription	NHLF	lung
2	chr11:70924800-70937000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:70925000-70937000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:70926600-70935800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:70929400-70938200	Strong transcription	HepG2	liver
6	chr11:70931200-70937200	Strong transcription	Fetal Intestine Small	intestine
7	chr11:70931600-70937000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:70932800-70935800	Strong transcription	Gastric	stomach
9	chr11:70933000-70937200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:70933400-70936000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:70933600-70935800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:70933600-70935800	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:70933600-70936200	Strong transcription	Liver	Liver
14	chr11:70933800-70935600	Strong transcription	H9 Cell Line	embryonic stem cell
15	chr11:70933800-70935800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:70933800-70935800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:70933800-70935800	Strong transcription	Fetal Intestine Large	intestine
18	chr11:70934000-70936200	Strong transcription	Pancreas	Pancrea
19	chr11:70934000-70936200	Strong transcription	A549	lung
20	chr11:70934000-70954200	Weak transcription	Colonic Mucosa	Colon
21	chr11:70934200-70935800	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr11:70934200-70936600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:70934400-70935800	Strong transcription	Fetal Stomach	stomach
24	chr11:70934400-70945600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:70934800-70936400	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr11:70934800-70937400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:70934800-70938200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr11:70935000-70935800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:70935200-70937200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:70935200-70938200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:70935400-70935600	Strong transcription	Lung	lung
32	chr11:70935400-70945600	Weak transcription	Placenta	Placenta
33	chr11:70935400-70949600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:70935400-70950600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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