Variant report

Variant	rs2919742
Chromosome Location	chr11:70965856-70965857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70964631..70967920-chr11:70993690..70996752,4	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1004872	1.00[ASN][1000 genomes]
rs11603698	1.00[CEU][hapmap]
rs1372108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1985681	1.00[ASN][1000 genomes]
rs2919720	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2919726	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2919727	1.00[ASN][1000 genomes]
rs2919728	1.00[ASN][1000 genomes]
rs2919729	1.00[ASN][1000 genomes]
rs2919736	0.87[AMR][1000 genomes]
rs2919740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3020024	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3020025	1.00[ASN][1000 genomes]
rs3020027	1.00[ASN][1000 genomes]
rs3020028	1.00[ASN][1000 genomes]
rs3020032	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3133512	1.00[CEU][hapmap]
rs4078937	0.89[ASN][1000 genomes]
rs60796828	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70964400-70966000	Bivalent Enhancer	Placenta	Placenta
2	chr11:70964400-70966800	Enhancers	Stomach Mucosa	stomach
3	chr11:70964400-70967400	Enhancers	Pancreas	Pancrea
4	chr11:70964600-70966200	Enhancers	Fetal Intestine Large	intestine
5	chr11:70964600-70966400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:70964600-70966400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:70964600-70966600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:70964600-70966600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:70964600-70967200	Enhancers	Fetal Intestine Small	intestine
10	chr11:70964600-70967400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr11:70965000-70966200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr11:70965000-70967600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:70965200-70966400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:70965400-70966800	Bivalent Enhancer	Fetal Kidney	kidney
15	chr11:70965400-70966800	Weak transcription	Spleen	Spleen
16	chr11:70965400-70967000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:70965400-70967200	Enhancers	HepG2	liver
18	chr11:70965400-70967400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:70965600-70966600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:70965600-70966800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:70965600-70966800	Weak transcription	A549	lung
22	chr11:70965600-70967000	Weak transcription	Gastric	stomach
23	chr11:70965800-70966200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:70965800-70966600	Weak transcription	H9 Cell Line	embryonic stem cell

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