Variant report

Variant	rs2920869
Chromosome Location	chr2:55363696-55363697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55272140..55279868-chr2:55356344..55371606,28	K562	blood:
2	chr2:55362876..55365443-chr2:55367028..55369648,3	MCF-7	breast:
3	chr2:55275855..55279437-chr2:55359990..55364186,7	K562	blood:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

rs_ID	r²[population]
rs10176839	0.86[EUR][1000 genomes]
rs10183953	0.86[EUR][1000 genomes]
rs10439479	0.86[EUR][1000 genomes]
rs11694920	0.86[EUR][1000 genomes]
rs12464094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12713290	0.86[EUR][1000 genomes]
rs1437389	0.86[EUR][1000 genomes]
rs1437392	0.86[EUR][1000 genomes]
rs1561231	0.86[EUR][1000 genomes]
rs1561232	0.86[EUR][1000 genomes]
rs1561233	0.86[EUR][1000 genomes]
rs2028138	0.86[EUR][1000 genomes]
rs2043714	0.86[EUR][1000 genomes]
rs2118283	0.86[EUR][1000 genomes]
rs2164715	0.86[EUR][1000 genomes]
rs2920845	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2920846	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4233959	0.86[EUR][1000 genomes]
rs4591380	0.86[EUR][1000 genomes]
rs6545476	0.86[EUR][1000 genomes]
rs6545479	0.86[EUR][1000 genomes]
rs6713058	0.86[EUR][1000 genomes]
rs6715694	0.86[EUR][1000 genomes]
rs6716066	0.86[EUR][1000 genomes]
rs6719579	0.86[EUR][1000 genomes]
rs6723870	0.86[EUR][1000 genomes]
rs6747682	0.86[EUR][1000 genomes]
rs6750501	0.86[EUR][1000 genomes]

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55361000-55364000	Weak transcription	Left Ventricle	heart
2	chr2:55361200-55364400	Weak transcription	Right Ventricle	heart
3	chr2:55361200-55365400	Enhancers	Fetal Intestine Small	intestine
4	chr2:55361400-55366400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:55361400-55370200	Enhancers	Fetal Intestine Large	intestine
6	chr2:55361600-55364000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:55361600-55364000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:55361600-55364200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:55361600-55364200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:55361600-55364400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr2:55361600-55365200	Enhancers	K562	blood
12	chr2:55361600-55365400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:55361600-55366000	Enhancers	Primary hematopoietic stem cells	blood
14	chr2:55361600-55368200	Weak transcription	Esophagus	oesophagus
15	chr2:55361800-55363800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr2:55361800-55364000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:55361800-55364000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr2:55361800-55364400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr2:55361800-55365000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:55361800-55365200	Enhancers	Brain Germinal Matrix	brain
21	chr2:55361800-55365200	Weak transcription	Fetal Heart	heart
22	chr2:55361800-55366800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr2:55361800-55366800	Weak transcription	Hela-S3	cervix
24	chr2:55361800-55367800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr2:55361800-55368000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:55361800-55368600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr2:55361800-55368800	Weak transcription	A549	lung
28	chr2:55361800-55373000	Weak transcription	HSMMtube	muscle
29	chr2:55361800-55378600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:55362000-55364000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr2:55362000-55364200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr2:55362000-55365200	Weak transcription	Fetal Brain Female	brain
33	chr2:55362000-55366600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr2:55362000-55366600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr2:55362200-55363800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr2:55362200-55364000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr2:55362200-55364000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr2:55362200-55364000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr2:55362200-55364000	Weak transcription	Colonic Mucosa	Colon
40	chr2:55362200-55364000	Weak transcription	Gastric	stomach
41	chr2:55362200-55364000	Weak transcription	Spleen	Spleen
42	chr2:55362200-55364200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr2:55362200-55364400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr2:55362200-55364400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr2:55362200-55364600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr2:55362200-55364600	Weak transcription	Ovary	ovary
47	chr2:55362200-55365200	Weak transcription	Fetal Kidney	kidney
48	chr2:55362200-55367600	Weak transcription	Dnd41	blood
49	chr2:55362200-55369000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr2:55362400-55368800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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