Variant report

Variant	rs2920881
Chromosome Location	chr2:55298517-55298518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55293555..55295689-chr2:55296862..55299716,2	K562	blood:
2	chr2:55280650..55283253-chr2:55298459..55300307,2	K562	blood:
3	chr2:55275701..55277282-chr2:55297013..55299339,2	MCF-7	breast:
4	chr2:55275188..55278852-chr2:55297245..55299744,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10179594	1.00[CHB][hapmap];0.85[CHD][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2920839	0.81[ASN][1000 genomes]
rs2920861	0.90[ASN][1000 genomes]
rs2920863	1.00[CHB][hapmap]
rs2920871	0.80[ASN][1000 genomes]
rs2920883	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2920884	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2920889	0.90[ASN][1000 genomes]
rs2920890	0.90[ASN][1000 genomes]
rs2920897	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2920898	0.85[CHB][hapmap]
rs2968789	1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2968792	0.86[ASN][1000 genomes]
rs2968812	1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap]
rs2968813	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2968814	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2968823	0.90[ASN][1000 genomes]
rs2968824	0.90[ASN][1000 genomes]
rs2968826	0.90[ASN][1000 genomes]
rs2968829	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2968831	0.83[ASN][1000 genomes]
rs2972065	0.90[ASN][1000 genomes]
rs2972066	0.85[ASN][1000 genomes]
rs2972067	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972069	0.90[ASN][1000 genomes]
rs2972073	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2972074	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2972076	0.83[ASN][1000 genomes]
rs7559248	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55297400-55300400	Weak transcription	Fetal Heart	heart
2	chr2:55298400-55298600	Enhancers	K562	blood
3	chr2:55298400-55298600	Enhancers	Osteobl	bone

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