Variant report

Variant	rs2928875
Chromosome Location	chr14:56523061-56523062
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10131576	0.84[EUR][1000 genomes]
rs1152456	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1152457	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1209097	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1212644	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1307324	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1613831	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1679764	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2622324	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2763574	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs377072	0.84[EUR][1000 genomes]
rs409492	0.84[EUR][1000 genomes]
rs430315	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56515200-56525400	Weak transcription	Fetal Intestine Large	intestine
2	chr14:56521600-56524400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:56521800-56523200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:56522000-56524400	Enhancers	Fetal Brain Male	brain
5	chr14:56522200-56523400	Enhancers	Fetal Brain Female	brain
6	chr14:56522400-56524400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:56522400-56524400	Enhancers	Brain Substantia Nigra	brain
8	chr14:56522600-56523200	Weak transcription	Brain Germinal Matrix	brain
9	chr14:56522600-56523400	Enhancers	Brain Angular Gyrus	brain
10	chr14:56522600-56523800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:56522600-56523800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:56522800-56523400	Enhancers	Brain Anterior Caudate	brain
13	chr14:56523000-56523400	Enhancers	Brain Cingulate Gyrus	brain
14	chr14:56523000-56524000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:56523000-56524000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr14:56523000-56524400	Enhancers	Brain Hippocampus Middle	brain
17	chr14:56523000-56524600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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