Variant report

Variant	rs2931292
Chromosome Location	chr8:62195660-62195661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10090442	1.00[ASN][1000 genomes]
rs1367974	0.82[JPT][hapmap]
rs2052993	0.82[JPT][hapmap]
rs2119228	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919303	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2919305	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2919311	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919312	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919313	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919314	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919315	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2931284	0.82[ASN][1000 genomes]
rs2931285	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2931286	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2931295	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2931322	0.82[JPT][hapmap]
rs2931323	0.82[JPT][hapmap]
rs2931351	0.82[ASN][1000 genomes]
rs2931353	0.86[ASN][1000 genomes]
rs2931354	0.82[ASN][1000 genomes]
rs2931355	0.82[ASN][1000 genomes]
rs2931356	0.82[ASN][1000 genomes]
rs2978491	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978498	0.82[JPT][hapmap]
rs2978548	0.82[ASN][1000 genomes]
rs2978550	0.82[ASN][1000 genomes]
rs2978552	0.82[ASN][1000 genomes]
rs2978558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4100940	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983455	0.82[JPT][hapmap]
rs7017483	0.82[JPT][hapmap]
rs7017626	0.82[JPT][hapmap]
rs7818621	0.82[ASN][1000 genomes]
rs7834568	0.82[ASN][1000 genomes]
rs7838580	0.82[ASN][1000 genomes]
rs964784	0.95[ASN][1000 genomes]
rs9650205	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv831336	chr8:62188396-62364873	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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