Variant report

Variant	rs2935969
Chromosome Location	chr15:76437970-76437971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76436946..76439521-chr3:195163273..195165269,2	MCF-7	breast:
2	chr15:76436435..76439411-chr15:76454805..76456724,2	K562	blood:
3	chr15:76435308..76438673-chr15:76443082..76445810,3	K562	blood:

Variant related genes	Relation type
ENSG00000114331	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11856680	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs12441886	0.84[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs12442282	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs12902022	0.84[CHB][hapmap]
rs17430570	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs1874767	0.88[ASN][1000 genomes]
rs2088485	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2405416	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2405417	0.91[ASN][1000 genomes]
rs2935978	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2935979	0.86[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2955721	0.84[AFR][1000 genomes]
rs2955722	0.84[AFR][1000 genomes]
rs2955723	0.85[LWK][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs2955724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2955726	0.99[ASN][1000 genomes]
rs2955728	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2955731	0.96[ASN][1000 genomes]
rs2955740	0.90[ASN][1000 genomes]
rs2955757	0.96[ASN][1000 genomes]
rs2959863	0.83[LWK][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs2959867	0.88[ASN][1000 genomes]
rs34482917	0.80[ASN][1000 genomes]
rs35798669	0.80[ASN][1000 genomes]
rs4886773	0.84[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs4886774	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs56853800	0.81[ASN][1000 genomes]
rs56998110	0.86[ASN][1000 genomes]
rs58555930	0.82[ASN][1000 genomes]
rs66563276	0.80[ASN][1000 genomes]
rs72736828	0.80[ASN][1000 genomes]
rs73446449	0.86[ASN][1000 genomes]
rs868576	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs904279	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs904280	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs904282	0.86[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs904283	0.86[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1039595	chr15:76431374-76483342	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1045860	chr15:76431374-76485536	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv1053643	chr15:76431374-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv1052496	chr15:76432823-76484981	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1036319	chr15:76432823-76489955	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv1035806	chr15:76435640-76483342	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv1047539	chr15:76435640-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	nsv1042750	chr15:76435640-76490547	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	nsv1054289	chr15:76437970-76485966	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76429400-76442800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:76429600-76442800	Weak transcription	Brain Angular Gyrus	brain
3	chr15:76432400-76440400	Weak transcription	Pancreas	Pancrea
4	chr15:76432400-76442800	Weak transcription	Gastric	stomach
5	chr15:76432600-76440400	Weak transcription	Placenta	Placenta
6	chr15:76432600-76442800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:76433000-76439600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:76433000-76440400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:76433000-76442800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:76433000-76452800	Weak transcription	Right Atrium	heart
11	chr15:76433200-76440600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr15:76433600-76439800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:76433600-76440400	Weak transcription	Spleen	Spleen
14	chr15:76436600-76438200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr15:76436800-76438400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr15:76437200-76439200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:76437400-76438000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr15:76437800-76438000	Flanking Active TSS	GM12878-XiMat	blood
19	chr15:76437800-76440400	Weak transcription	Primary monocytes fromperipheralblood	blood

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