Variant report

Variant	rs2938694
Chromosome Location	chr15:76682412-76682413
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:76682373-76682848	HL-60	blood:	n/a	chr15:76682597-76682606 chr15:76682626-76682639

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76682322..76685221-chr15:76690968..76692645,2	MCF-7	breast:

Variant related genes	Relation type
SCAPER	TF binding region

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10220790	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12708522	0.83[AMR][1000 genomes]
rs1499019	0.83[AMR][1000 genomes]
rs1499020	0.83[AMR][1000 genomes]
rs1499022	0.83[AMR][1000 genomes]
rs1533600	0.83[AMR][1000 genomes]
rs157764	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157765	0.83[AMR][1000 genomes]
rs157767	0.83[AMR][1000 genomes]
rs157770	0.83[AMR][1000 genomes]
rs157771	1.00[AMR][1000 genomes]
rs157772	0.83[AMR][1000 genomes]
rs157773	0.83[AMR][1000 genomes]
rs157774	0.83[AMR][1000 genomes]
rs157781	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157782	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157784	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs157786	0.83[AMR][1000 genomes]
rs157792	0.83[AMR][1000 genomes]
rs157793	0.83[AMR][1000 genomes]
rs166905	0.83[AMR][1000 genomes]
rs166932	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1810347	0.83[AMR][1000 genomes]
rs1814764	0.83[AMR][1000 genomes]
rs185860	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1875886	0.83[AMR][1000 genomes]
rs1878877	0.83[AMR][1000 genomes]
rs190782	0.83[AMR][1000 genomes]
rs2037306	0.83[AMR][1000 genomes]
rs2176622	0.83[AMR][1000 genomes]
rs2244050	0.83[AMR][1000 genomes]
rs2245180	0.83[AMR][1000 genomes]
rs2247488	0.83[AMR][1000 genomes]
rs2250805	0.83[AMR][1000 genomes]
rs2404735	0.83[AMR][1000 genomes]
rs2405329	0.83[AMR][1000 genomes]
rs2405330	0.83[AMR][1000 genomes]
rs2405332	0.83[AMR][1000 genomes]
rs2456030	0.83[AMR][1000 genomes]
rs2456032	0.83[AMR][1000 genomes]
rs2456034	0.83[AMR][1000 genomes]
rs2456035	0.83[AMR][1000 genomes]
rs2456036	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2456037	0.83[AMR][1000 genomes]
rs2456038	0.83[AMR][1000 genomes]
rs2456039	0.83[AMR][1000 genomes]
rs2456044	0.83[AMR][1000 genomes]
rs2456056	0.83[AMR][1000 genomes]
rs2456058	0.83[AMR][1000 genomes]
rs2456059	0.83[AMR][1000 genomes]
rs2456062	0.83[AMR][1000 genomes]
rs2456064	0.83[AMR][1000 genomes]
rs2456068	0.83[AMR][1000 genomes]
rs2456069	0.83[AMR][1000 genomes]
rs2456077	0.83[AMR][1000 genomes]
rs2459364	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2460141	0.83[AMR][1000 genomes]
rs2460143	0.83[AMR][1000 genomes]
rs2460145	0.83[AMR][1000 genomes]
rs2460149	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2460157	0.83[AMR][1000 genomes]
rs2460159	0.83[AMR][1000 genomes]
rs2468117	0.83[AMR][1000 genomes]
rs2469209	0.83[AMR][1000 genomes]
rs2469217	0.83[AMR][1000 genomes]
rs2469218	0.83[AMR][1000 genomes]
rs2469219	0.83[AMR][1000 genomes]
rs2469220	0.83[AMR][1000 genomes]
rs2469221	0.83[AMR][1000 genomes]
rs2469223	0.83[AMR][1000 genomes]
rs2469240	0.83[AMR][1000 genomes]
rs2469243	0.83[AMR][1000 genomes]
rs2469536	0.83[AMR][1000 genomes]
rs2469537	0.83[AMR][1000 genomes]
rs2469540	0.83[AMR][1000 genomes]
rs2469545	0.83[AMR][1000 genomes]
rs2469546	0.83[AMR][1000 genomes]
rs2469549	0.83[AMR][1000 genomes]
rs2469550	0.83[AMR][1000 genomes]
rs2469551	0.83[AMR][1000 genomes]
rs2469553	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2469571	0.83[AMR][1000 genomes]
rs2469572	0.83[AMR][1000 genomes]
rs2469574	0.83[AMR][1000 genomes]
rs2516308	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283786	0.83[AMR][1000 genomes]
rs283788	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283790	0.83[AMR][1000 genomes]
rs283792	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283794	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283797	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283798	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs283800	0.83[AMR][1000 genomes]
rs284879	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs284882	0.83[AMR][1000 genomes]
rs284887	0.83[AMR][1000 genomes]
rs284888	0.83[AMR][1000 genomes]
rs284889	0.83[AMR][1000 genomes]
rs284890	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs284894	0.90[AFR][1000 genomes]
rs284900	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938692	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938693	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938696	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938698	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2944379	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2944380	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2948702	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2956872	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2957558	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2957608	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs415439	0.83[AMR][1000 genomes]
rs416812	0.90[AFR][1000 genomes]
rs426225	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4886797	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs542148	0.83[AMR][1000 genomes]
rs560598	0.83[AMR][1000 genomes]
rs598011	0.83[AMR][1000 genomes]
rs6495202	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs654416	0.83[AMR][1000 genomes]
rs7164815	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8040818	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs937731	0.83[AMR][1000 genomes]
rs937734	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510667	chr15:76653359-76708310	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76639800-76682600	Weak transcription	Pancreas	Pancrea
2	chr15:76639800-76695400	Weak transcription	Spleen	Spleen
3	chr15:76639800-76727400	Weak transcription	Right Ventricle	heart
4	chr15:76640800-76694600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr15:76641400-76694600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:76642800-76693800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:76643800-76695000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:76645800-76686200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:76646600-76695400	Weak transcription	Ovary	ovary
10	chr15:76660800-76693600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:76661000-76685800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:76661000-76695200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:76661000-76695400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:76661000-76695400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:76661000-76708600	Weak transcription	Brain Anterior Caudate	brain
16	chr15:76661200-76698000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:76661200-76710800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:76661600-76698000	Weak transcription	Dnd41	blood
19	chr15:76662400-76695400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:76664800-76698000	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:76666200-76694600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:76666200-76696200	Weak transcription	Brain Angular Gyrus	brain
23	chr15:76666200-76706800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr15:76666400-76694600	Weak transcription	Adipose Nuclei	Adipose
25	chr15:76666400-76695200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr15:76666400-76695400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr15:76666400-76698200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:76666600-76695200	Weak transcription	Fetal Muscle Leg	muscle
29	chr15:76668800-76695000	Weak transcription	Fetal Brain Female	brain
30	chr15:76668800-76695400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr15:76669600-76695200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:76669800-76693600	Weak transcription	Fetal Intestine Large	intestine
33	chr15:76669800-76694200	Weak transcription	Psoas Muscle	Psoas
34	chr15:76670600-76683400	Weak transcription	HepG2	liver
35	chr15:76673200-76686000	Weak transcription	Fetal Stomach	stomach
36	chr15:76673200-76727400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:76673800-76694800	Weak transcription	Primary B cells from cord blood	blood
38	chr15:76674400-76695400	Weak transcription	Lung	lung
39	chr15:76674600-76694800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr15:76674600-76718400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:76675200-76682800	Weak transcription	Aorta	Aorta
42	chr15:76675800-76696200	Weak transcription	Fetal Brain Male	brain
43	chr15:76678200-76695200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:76678200-76695400	Weak transcription	Left Ventricle	heart
45	chr15:76679600-76693800	Weak transcription	Liver	Liver
46	chr15:76680600-76685000	Weak transcription	Primary T cells from cord blood	blood
47	chr15:76682000-76682600	Strong transcription	Fetal Intestine Small	intestine
48	chr15:76682200-76683000	Enhancers	Primary neutrophils fromperipheralblood	blood

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