Variant report

Variant	rs2940752
Chromosome Location	chr11:55682111-55682112
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:55682099-55682149	MCF-7	breast:	n/a
2	chr11:55682099-55682149	SAEC	small airway:	n/a
3	chr11:55682099-55682149	NH-A	brain:	n/a
4	chr11:55682099-55682149	HCPEpiC	choroid plexus:	n/a
5	chr11:55682099-55682149	GM06990	blood:	n/a
6	chr11:55682099-55682149	AG09309	skin:	n/a
7	chr11:55682099-55682149	HCM	heart:	n/a
8	chr11:55682099-55682149	HCT-116	colon:	n/a
9	chr11:55682099-55682149	PANC-1	pancreas:	n/a
10	chr11:55682099-55682149	HRPEpiC	eye:	n/a
11	chr11:55682099-55682149	SK-N-MC	brain:	n/a
12	chr11:55682099-55682149	SK-N-SH_RA	brain:	n/a
13	chr11:55682099-55682149	GM12878	blood:	n/a
14	chr11:55682099-55682149	AG09319	gingival:	n/a
15	chr11:55682099-55682149	HUVEC	blood vessel:	n/a
16	chr11:55682099-55682149	AoSMC	blood vessel:	n/a
17	chr11:55682099-55682149	PrEC	prostate:	n/a
18	chr11:55682099-55682149	ECC-1	luminal epithelium:	n/a
19	chr11:55682099-55682149	Jurkat	blood:	n/a
20	chr11:55682099-55682149	HRCEpiC	kidney:	n/a
21	chr11:55682099-55682149	NHBE	bronchial:	n/a
22	chr11:55682099-55682149	HL-60	blood:	n/a
23	chr11:55682099-55682149	A549	lung:	n/a
24	chr11:55682099-55682149	GM12891	blood:	n/a
25	chr11:55682099-55682149	SKMC	muscle:	n/a
26	chr11:55682099-55682149	HepG2	liver:	n/a
27	chr11:55682099-55682149	HNPCEpiC	eye:	n/a
28	chr11:55682099-55682149	HEK293	kidney:	embryo
29	chr11:55682099-55682149	U87	brain:	n/a
30	chr11:55682099-55682149	NHDF-neo	bronchial:	n/a
31	chr11:55682099-55682149	BE2_C	brain:	n/a
32	chr11:55682099-55682149	AG04449	skin:	fetal
33	chr11:55682099-55682149	BJ	skin:	n/a
34	chr11:55682099-55682149	ovcar-3	ovarian:	n/a
35	chr11:55682099-55682149	HRE	kidney:	n/a
36	chr11:55682099-55682149	Caco-2	colon:	n/a
37	chr11:55682099-55682149	T-47D	breast:	n/a
38	chr11:55682099-55682149	GM19239	blood:	n/a
39	chr11:55682099-55682149	HAEpiC	amniotic membrane:	n/a
40	chr11:55682099-55682149	K562	blood:	n/a
41	chr11:55682099-55682149	NT2-D1	testis:	n/a
42	chr11:55682099-55682149	HMEC	breast:	n/a
43	chr11:55682099-55682149	Hela-S3	cervix:	n/a
44	chr11:55682099-55682149	CMK	blood:	n/a
45	chr11:55682099-55682149	LNCaP	prostate:	n/a
46	chr11:55682099-55682149	HPAEpiC	pulmonary alveolar:	n/a
47	chr11:55682099-55682149	HIPEpiC	eye:	n/a
48	chr11:55682099-55682149	MCF10A-Er-Src	breast:	n/a
49	chr11:55682099-55682149	ProgFib	skin:	n/a
50	chr11:55682099-55682149	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
OR5W2	CpG island

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs297083	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
5	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
9	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv1044174	chr11:55501796-55862172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	nsv832158	chr11:55550160-55701309	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv982948	chr11:55676038-55741474	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv437718	chr11:55679983-55828756	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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