Variant report

Variant	rs294954
Chromosome Location	chr5:151550116-151550117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs294947	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs294955	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs294959	0.86[CHB][hapmap]
rs29825	0.80[EUR][1000 genomes]
rs29827	0.85[EUR][1000 genomes]
rs29835	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs29838	0.84[EUR][1000 genomes]
rs40812	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151548800-151550200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:151548800-151551600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:151549000-151550800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:151549200-151550200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:151549200-151550400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:151549400-151551000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:151549600-151550400	Enhancers	Aorta	Aorta
8	chr5:151549600-151550400	Enhancers	Ovary	ovary
9	chr5:151549600-151550600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:151549800-151550200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:151549800-151550400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:151549800-151550400	Enhancers	Adipose Nuclei	Adipose
13	chr5:151550000-151550200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr5:151550000-151552000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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