Variant report

Variant	rs294955
Chromosome Location	chr5:151549022-151549023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs294947	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs294954	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs294959	0.85[CHB][hapmap]
rs29825	0.85[EUR][1000 genomes]
rs29827	0.90[EUR][1000 genomes]
rs29835	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs29838	0.89[EUR][1000 genomes]
rs40812	0.85[EUR][1000 genomes]
rs410723	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151547400-151549200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:151547600-151549400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:151548000-151550000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:151548200-151549800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:151548400-151549600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:151548800-151550200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:151548800-151551600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:151549000-151549200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:151549000-151550800	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links