Variant report
| Variant | rs2949870 |
|---|---|
| Chromosome Location | chr11:93748299-93748300 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11605140 | 0.81[EUR][1000 genomes] |
| rs12222414 | 0.82[EUR][1000 genomes] |
| rs1506658 | 0.81[EUR][1000 genomes] |
| rs1518561 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2135527 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2939619 | 0.84[EUR][1000 genomes] |
| rs2939620 | 0.93[EUR][1000 genomes] |
| rs2945632 | 0.98[EUR][1000 genomes] |
| rs2945633 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2945635 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2945636 | 0.94[EUR][1000 genomes] |
| rs2949855 | 0.95[EUR][1000 genomes] |
| rs2949864 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2949865 | 0.98[EUR][1000 genomes] |
| rs2949866 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2949867 | 0.96[EUR][1000 genomes] |
| rs2949868 | 0.98[EUR][1000 genomes] |
| rs2949869 | 0.96[EUR][1000 genomes] |
| rs3020005 | 0.98[EUR][1000 genomes] |
| rs3020006 | 0.95[ASN][1000 genomes] |
| rs59527139 | 0.82[EUR][1000 genomes] |
| rs60833228 | 0.82[EUR][1000 genomes] |
| rs67268439 | 0.81[EUR][1000 genomes] |
| rs7113975 | 0.82[EUR][1000 genomes] |
| rs908752 | 0.98[EUR][1000 genomes] |
| rs995932 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049467 | chr11:93651025-93778717 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv898183 | chr11:93725384-93906735 | Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv898184 | chr11:93741612-93969726 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:93746000-93749600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 2 | chr11:93747800-93750400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
