Variant report

Variant	rs2955722
Chromosome Location	chr15:76439787-76439788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76439768..76440654-chr15:77152468..77153214,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1018098	0.93[ASN][1000 genomes]
rs1391470	0.92[ASN][1000 genomes]
rs28435523	0.92[ASN][1000 genomes]
rs28623186	0.92[ASN][1000 genomes]
rs2935969	0.84[AFR][1000 genomes]
rs2935971	0.93[ASN][1000 genomes]
rs2955721	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955723	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955725	0.92[ASN][1000 genomes]
rs2955729	0.92[ASN][1000 genomes]
rs2955730	0.92[ASN][1000 genomes]
rs2955738	0.92[ASN][1000 genomes]
rs2955742	0.92[ASN][1000 genomes]
rs2957039	0.85[ASN][1000 genomes]
rs2957042	0.85[ASN][1000 genomes]
rs2959861	0.92[ASN][1000 genomes]
rs2959863	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56036713	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs74024091	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8043371	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs882791	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1039595	chr15:76431374-76483342	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1045860	chr15:76431374-76485536	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv1053643	chr15:76431374-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv1052496	chr15:76432823-76484981	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1036319	chr15:76432823-76489955	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv1035806	chr15:76435640-76483342	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv1047539	chr15:76435640-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	nsv1042750	chr15:76435640-76490547	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	nsv1054289	chr15:76437970-76485966	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76429400-76442800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:76429600-76442800	Weak transcription	Brain Angular Gyrus	brain
3	chr15:76432400-76440400	Weak transcription	Pancreas	Pancrea
4	chr15:76432400-76442800	Weak transcription	Gastric	stomach
5	chr15:76432600-76440400	Weak transcription	Placenta	Placenta
6	chr15:76432600-76442800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:76433000-76440400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:76433000-76442800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr15:76433000-76452800	Weak transcription	Right Atrium	heart
10	chr15:76433200-76440600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:76433600-76439800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:76433600-76440400	Weak transcription	Spleen	Spleen
13	chr15:76437800-76440400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr15:76438200-76440400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr15:76438200-76442400	Weak transcription	GM12878-XiMat	blood
16	chr15:76439000-76439800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr15:76439200-76439800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:76439200-76439800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:76439200-76440200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr15:76439200-76441400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:76439400-76440400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:76439600-76439800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr15:76439600-76440200	Weak transcription	HMEC	breast
24	chr15:76439600-76440400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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