Variant report

Variant	rs2955748
Chromosome Location	chr15:76444683-76444684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76442105..76446396-chr15:76447199..76450761,5	MCF-7	breast:
2	chr15:76435308..76437788-chr15:76443138..76445810,3	K562	blood:
3	chr15:76435308..76438673-chr15:76443082..76445810,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1018099	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018100	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072573	0.89[ASN][1000 genomes]
rs12443152	0.87[ASN][1000 genomes]
rs2955732	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955741	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2959862	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4886480	0.83[ASN][1000 genomes]
rs4886481	0.83[ASN][1000 genomes]
rs868577	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1039595	chr15:76431374-76483342	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1045860	chr15:76431374-76485536	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv1053643	chr15:76431374-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv1052496	chr15:76432823-76484981	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1036319	chr15:76432823-76489955	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv1035806	chr15:76435640-76483342	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv1047539	chr15:76435640-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	nsv1042750	chr15:76435640-76490547	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	nsv1054289	chr15:76437970-76485966	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76433000-76452800	Weak transcription	Right Atrium	heart
2	chr15:76440400-76445000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:76440400-76447000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:76440800-76445200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr15:76440800-76445600	Weak transcription	Spleen	Spleen
6	chr15:76442400-76445400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr15:76442600-76446400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:76442600-76446400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:76442800-76444800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr15:76442800-76445000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:76442800-76446400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr15:76443000-76453800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:76443200-76444800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr15:76443200-76447200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:76443200-76447200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:76443200-76483000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:76443400-76445800	Weak transcription	Fetal Brain Male	brain
18	chr15:76443400-76466000	Weak transcription	Brain Angular Gyrus	brain
19	chr15:76443600-76445800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr15:76443600-76446000	Weak transcription	Fetal Brain Female	brain
21	chr15:76444000-76445200	Weak transcription	Psoas Muscle	Psoas
22	chr15:76444200-76447800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr15:76444200-76447800	Weak transcription	HSMM	muscle
24	chr15:76444400-76447600	Weak transcription	NHDF-Ad	bronchial
25	chr15:76444400-76452800	Weak transcription	HMEC	breast
26	chr15:76444600-76445200	Enhancers	Fetal Muscle Trunk	muscle
27	chr15:76444600-76446400	Enhancers	Pancreas	Pancrea
28	chr15:76444600-76448800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:76444600-76448800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links