Variant report

Variant	rs2956872
Chromosome Location	chr15:76695270-76695271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76695076..76699060-chr15:76702515..76705224,4	K562	blood:

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10220790	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12708522	1.00[AMR][1000 genomes]
rs1499019	1.00[AMR][1000 genomes]
rs1499020	1.00[AMR][1000 genomes]
rs1499022	1.00[AMR][1000 genomes]
rs1533600	1.00[AMR][1000 genomes]
rs157764	0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157765	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157767	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157770	1.00[AMR][1000 genomes]
rs157771	0.83[AMR][1000 genomes]
rs157772	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs157773	1.00[AMR][1000 genomes]
rs157774	1.00[AMR][1000 genomes]
rs157781	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157782	0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157784	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157786	1.00[AMR][1000 genomes]
rs157792	1.00[AMR][1000 genomes]
rs157793	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs166905	1.00[AMR][1000 genomes]
rs166932	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1810347	1.00[AMR][1000 genomes]
rs1814764	1.00[AMR][1000 genomes]
rs185860	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1875886	1.00[AMR][1000 genomes]
rs1878877	1.00[AMR][1000 genomes]
rs190782	1.00[AMR][1000 genomes]
rs2037306	1.00[AMR][1000 genomes]
rs2176622	1.00[AMR][1000 genomes]
rs2244050	1.00[AMR][1000 genomes]
rs2245180	1.00[AMR][1000 genomes]
rs2247488	1.00[AMR][1000 genomes]
rs2250805	1.00[AMR][1000 genomes]
rs2404735	1.00[AMR][1000 genomes]
rs2405329	1.00[AMR][1000 genomes]
rs2405330	1.00[AMR][1000 genomes]
rs2405332	1.00[AMR][1000 genomes]
rs2439983	1.00[AMR][1000 genomes]
rs2456030	1.00[AMR][1000 genomes]
rs2456032	1.00[AMR][1000 genomes]
rs2456034	1.00[AMR][1000 genomes]
rs2456035	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456036	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456037	1.00[AMR][1000 genomes]
rs2456038	1.00[AMR][1000 genomes]
rs2456039	1.00[AMR][1000 genomes]
rs2456043	0.83[AMR][1000 genomes]
rs2456044	1.00[AMR][1000 genomes]
rs2456056	1.00[AMR][1000 genomes]
rs2456058	1.00[AMR][1000 genomes]
rs2456059	1.00[AMR][1000 genomes]
rs2456062	1.00[AMR][1000 genomes]
rs2456064	1.00[AMR][1000 genomes]
rs2456068	1.00[AMR][1000 genomes]
rs2456069	1.00[AMR][1000 genomes]
rs2456077	1.00[AMR][1000 genomes]
rs2459364	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2460141	1.00[AMR][1000 genomes]
rs2460143	1.00[AMR][1000 genomes]
rs2460145	1.00[AMR][1000 genomes]
rs2460149	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2460157	1.00[AMR][1000 genomes]
rs2460159	1.00[AMR][1000 genomes]
rs2468117	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469209	1.00[AMR][1000 genomes]
rs2469217	1.00[AMR][1000 genomes]
rs2469218	1.00[AMR][1000 genomes]
rs2469219	1.00[AMR][1000 genomes]
rs2469220	1.00[AMR][1000 genomes]
rs2469221	1.00[AMR][1000 genomes]
rs2469223	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469240	1.00[AMR][1000 genomes]
rs2469243	1.00[AMR][1000 genomes]
rs2469536	1.00[AMR][1000 genomes]
rs2469537	1.00[AMR][1000 genomes]
rs2469540	1.00[AMR][1000 genomes]
rs2469545	1.00[AMR][1000 genomes]
rs2469546	1.00[AMR][1000 genomes]
rs2469549	1.00[AMR][1000 genomes]
rs2469550	1.00[AMR][1000 genomes]
rs2469551	1.00[AMR][1000 genomes]
rs2469553	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469557	0.85[AFR][1000 genomes]
rs2469571	1.00[AMR][1000 genomes]
rs2469572	1.00[AMR][1000 genomes]
rs2469574	1.00[AMR][1000 genomes]
rs2516308	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs283786	1.00[AMR][1000 genomes]
rs283788	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs283790	1.00[AMR][1000 genomes]
rs283792	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs283794	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs283797	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs283798	0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs283800	1.00[AMR][1000 genomes]
rs284879	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs284882	1.00[AMR][1000 genomes]
rs284887	1.00[AMR][1000 genomes]
rs284888	1.00[AMR][1000 genomes]
rs284889	1.00[AMR][1000 genomes]
rs284890	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs284894	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs284896	0.94[YRI][hapmap]
rs284900	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2938692	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2938693	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2938694	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2938696	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2938698	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2944379	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2944380	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2948702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2957558	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2957608	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2957609	1.00[YRI][hapmap]
rs415439	1.00[AMR][1000 genomes]
rs416812	1.00[AFR][1000 genomes]
rs426225	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4886797	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs542148	1.00[AMR][1000 genomes]
rs560598	1.00[AMR][1000 genomes]
rs598011	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs6495202	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs654416	1.00[AMR][1000 genomes]
rs7164815	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040818	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs937731	1.00[AMR][1000 genomes]
rs937734	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510667	chr15:76653359-76708310	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76639800-76695400	Weak transcription	Spleen	Spleen
2	chr15:76639800-76727400	Weak transcription	Right Ventricle	heart
3	chr15:76646600-76695400	Weak transcription	Ovary	ovary
4	chr15:76661000-76695400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:76661000-76695400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:76661000-76708600	Weak transcription	Brain Anterior Caudate	brain
7	chr15:76661200-76698000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:76661200-76710800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:76661600-76698000	Weak transcription	Dnd41	blood
10	chr15:76662400-76695400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:76664800-76698000	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:76666200-76696200	Weak transcription	Brain Angular Gyrus	brain
13	chr15:76666200-76706800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr15:76666400-76695400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr15:76666400-76698200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:76668800-76695400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:76673200-76727400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:76674400-76695400	Weak transcription	Lung	lung
19	chr15:76674600-76718400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:76675800-76696200	Weak transcription	Fetal Brain Male	brain
21	chr15:76678200-76695400	Weak transcription	Left Ventricle	heart
22	chr15:76682600-76713800	Weak transcription	Fetal Intestine Small	intestine
23	chr15:76683200-76699000	Weak transcription	Gastric	stomach
24	chr15:76684800-76718200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:76685400-76695400	Weak transcription	Pancreas	Pancrea
26	chr15:76686800-76697600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:76686800-76699800	Weak transcription	Fetal Stomach	stomach
28	chr15:76689000-76698600	Weak transcription	Thymus	Thymus
29	chr15:76691000-76698000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr15:76691000-76703600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr15:76691200-76698400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:76691200-76698400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:76691200-76698400	Weak transcription	Fetal Kidney	kidney
34	chr15:76693600-76695800	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:76693600-76695800	Strong transcription	Fetal Intestine Large	intestine
36	chr15:76693600-76696200	Weak transcription	Brain Substantia Nigra	brain
37	chr15:76693600-76720400	Weak transcription	Colon Smooth Muscle	Colon
38	chr15:76693800-76695400	Weak transcription	Fetal Lung	lung
39	chr15:76693800-76696200	Weak transcription	Esophagus	oesophagus
40	chr15:76693800-76697200	Strong transcription	Liver	Liver
41	chr15:76694000-76695400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:76694000-76697400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:76694200-76695400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:76694200-76695600	Enhancers	Psoas Muscle	Psoas
45	chr15:76694400-76695800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:76694400-76696800	Weak transcription	Aorta	Aorta
47	chr15:76694400-76697000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr15:76694400-76698000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr15:76694600-76697000	Strong transcription	Primary T cells from cord blood	blood
50	chr15:76694600-76697000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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