Variant report

Variant	rs2956877
Chromosome Location	chr15:77245587-77245588
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77245562..77247184-chr15:77254642..77256229,2	K562	blood:
2	chr15:77224050..77226260-chr15:77243934..77246089,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117906	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1706848	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711018	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711019	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1913001	0.85[AFR][1000 genomes]
rs2046416	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs280026	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3099136	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3099147	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3102708	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3106376	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4886841	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495225	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7178950	1.00[EUR][1000 genomes]
rs7183961	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs925492	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77224800-77256000	Weak transcription	Pancreas	Pancrea
2	chr15:77225000-77247000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:77225000-77254600	Weak transcription	Aorta	Aorta
4	chr15:77225000-77260200	Weak transcription	Right Ventricle	heart
5	chr15:77225200-77246400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:77225400-77255400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:77226200-77247200	Weak transcription	Fetal Brain Male	brain
8	chr15:77228200-77245600	Weak transcription	HMEC	breast
9	chr15:77229200-77251600	Weak transcription	NHLF	lung
10	chr15:77229400-77249000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:77229400-77254400	Weak transcription	Psoas Muscle	Psoas
12	chr15:77229400-77255000	Weak transcription	Gastric	stomach
13	chr15:77231400-77246400	Weak transcription	GM12878-XiMat	blood
14	chr15:77231400-77251800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:77231600-77247200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:77233800-77253400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:77234800-77246600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:77237200-77253000	Weak transcription	Ovary	ovary
19	chr15:77238200-77247000	Weak transcription	Fetal Kidney	kidney
20	chr15:77238600-77246800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:77238800-77246600	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:77240000-77246800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr15:77241400-77256000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:77241600-77253800	Weak transcription	HSMMtube	muscle
25	chr15:77241800-77246000	Weak transcription	NHDF-Ad	bronchial
26	chr15:77242000-77247600	Weak transcription	NHEK	skin
27	chr15:77242000-77250800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:77242200-77246800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:77242600-77245800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:77242800-77245600	Weak transcription	Hela-S3	cervix
31	chr15:77242800-77251800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:77243200-77246200	Weak transcription	Fetal Intestine Small	intestine
33	chr15:77243200-77247200	Weak transcription	Fetal Stomach	stomach
34	chr15:77243200-77251800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:77243400-77249800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:77243600-77245600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr15:77243600-77245600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr15:77243600-77245800	Weak transcription	HSMM	muscle
39	chr15:77243600-77246200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:77243600-77246400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:77243600-77247000	Weak transcription	Brain Germinal Matrix	brain
42	chr15:77243600-77247200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr15:77243600-77252200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:77243600-77253600	Weak transcription	Osteobl	bone
45	chr15:77243800-77245600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr15:77243800-77245600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr15:77243800-77245600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:77243800-77245600	Weak transcription	Liver	Liver
49	chr15:77243800-77245600	Weak transcription	Placenta	Placenta
50	chr15:77243800-77245800	Weak transcription	Primary T cells fromperipheralblood	blood

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