Variant report

Variant	rs2957610
Chromosome Location	chr15:76712244-76712245
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10152388	1.00[EUR][1000 genomes]
rs157579	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2404739	1.00[EUR][1000 genomes]
rs2469225	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs284906	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2957559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8032258	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76639800-76727400	Weak transcription	Right Ventricle	heart
2	chr15:76673200-76727400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:76674600-76718400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:76682600-76713800	Weak transcription	Fetal Intestine Small	intestine
5	chr15:76684800-76718200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:76693600-76720400	Weak transcription	Colon Smooth Muscle	Colon
7	chr15:76695800-76726000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr15:76696600-76720600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:76697000-76718400	Weak transcription	Ovary	ovary
10	chr15:76697000-76719200	Weak transcription	Primary T cells from cord blood	blood
11	chr15:76697000-76720800	Weak transcription	Aorta	Aorta
12	chr15:76697000-76722200	Weak transcription	Spleen	Spleen
13	chr15:76697000-76723400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr15:76697000-76724000	Weak transcription	Brain Substantia Nigra	brain
15	chr15:76697000-76724400	Weak transcription	Pancreas	Pancrea
16	chr15:76697000-76726000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:76697000-76726400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:76697200-76720400	Weak transcription	Liver	Liver
19	chr15:76711200-76720800	Weak transcription	Left Ventricle	heart
20	chr15:76711600-76721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:76711600-76728400	Weak transcription	Placenta	Placenta
22	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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