Variant report

Variant	rs2957797
Chromosome Location	chr8:63493436-63493437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1351365	0.85[EUR][1000 genomes]
rs1451856	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1531657	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2127577	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2620876	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4483149	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7844749	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs827683	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs827684	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs827687	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs862386	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs936620	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv890959	chr8:63449156-63515522	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63490600-63497000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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