Variant report

Variant	rs2959299
Chromosome Location	chr15:52223389-52223390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr15:52223180-52223489	H1-hESC	embryonic stem cell:	n/a	chr15:52223331-52223343
2	POLR2A	chr15:52223318-52223438	ProgFib	skin:	n/a	n/a
3	POLR2A	chr15:52223337-52223532	K562	blood:	n/a	n/a
4	POLR2A	chr15:52222610-52223461	A549	lung:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAPK6-3	chr15:52223228-52223505	NONHSAT043890

Variant related genes	Relation type
ENSG00000259556	TF binding region
TMOD3	TF binding region

Extended variants
information (count: 269 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:266)

rs_ID	r²[population]
rs1025184	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs1035737	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1035739	0.89[EUR][1000 genomes]
rs10444824	0.87[EUR][1000 genomes]
rs10444825	0.86[EUR][1000 genomes]
rs10775145	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs10851503	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10851504	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070865	1.00[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs11070866	0.81[EUR][1000 genomes]
rs11070867	0.81[EUR][1000 genomes]
rs11070868	1.00[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs11070869	0.87[EUR][1000 genomes]
rs1135871	0.85[EUR][1000 genomes]
rs11630253	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11630579	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs11630943	1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs11631858	0.85[EUR][1000 genomes]
rs11636345	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs11636869	0.88[EUR][1000 genomes]
rs11637876	0.93[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11638677	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11638820	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs12050524	0.86[EUR][1000 genomes]
rs12591672	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12592771	0.94[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs12593708	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12901638	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12902346	0.85[EUR][1000 genomes]
rs12902930	0.92[ASN][1000 genomes]
rs12903707	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs12903781	0.94[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs12904413	0.87[EUR][1000 genomes]
rs12904900	0.86[EUR][1000 genomes]
rs12905283	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs12908327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12912928	0.88[EUR][1000 genomes]
rs12913583	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12913850	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12915015	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12915568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12917133	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs1350174	0.83[TSI][hapmap]
rs17526463	1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17526760	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17539905	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17610862	0.87[EUR][1000 genomes]
rs17611193	1.00[CEU][hapmap];0.97[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17612102	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17612123	0.92[EUR][1000 genomes]
rs17705817	0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1811326	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs1840708	1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs1863430	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1972689	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs1991267	0.85[CEU][hapmap]
rs2006773	0.93[EUR][1000 genomes]
rs2007335	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2007355	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2009972	0.89[CEU][hapmap];0.89[TSI][hapmap]
rs2010026	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2011995	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2014638	0.86[GIH][hapmap];0.89[TSI][hapmap]
rs2034856	1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs2034857	0.87[GIH][hapmap];0.87[TSI][hapmap]
rs2034858	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2052705	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2052706	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2052708	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2052709	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2077743	0.83[TSI][hapmap]
rs2114191	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2241503	0.96[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs2251135	0.85[EUR][1000 genomes]
rs2252606	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2252831	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs2253116	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs2258248	0.85[CEU][hapmap]
rs2303443	0.88[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes]
rs2414122	0.84[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2433217	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2433221	0.93[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2433222	0.97[EUR][1000 genomes]
rs2436655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2436656	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2436657	0.97[EUR][1000 genomes]
rs2436658	0.95[EUR][1000 genomes]
rs2436660	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2436662	0.93[EUR][1000 genomes]
rs2441780	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2448946	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2448947	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2448948	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2448949	0.94[EUR][1000 genomes]
rs2448950	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2448951	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2448953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470590	0.85[EUR][1000 genomes]
rs2470591	0.85[EUR][1000 genomes]
rs2470599	0.97[ASN][1000 genomes]
rs2470600	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470601	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470602	0.95[EUR][1000 genomes]
rs2470603	0.89[EUR][1000 genomes]
rs2470604	0.85[EUR][1000 genomes]
rs2470605	0.88[EUR][1000 genomes]
rs2470607	0.89[EUR][1000 genomes]
rs2470608	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470610	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2470611	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2470615	0.83[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2470616	0.94[EUR][1000 genomes]
rs2470617	0.96[CEU][hapmap];0.90[GIH][hapmap];0.86[TSI][hapmap]
rs2470618	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2554314	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2554322	0.96[EUR][1000 genomes]
rs2554327	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs2554328	0.93[EUR][1000 genomes]
rs2554336	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2554337	0.85[EUR][1000 genomes]
rs2554342	0.96[EUR][1000 genomes]
rs2554348	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs2554349	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes]
rs2554350	0.97[EUR][1000 genomes]
rs2554353	0.93[EUR][1000 genomes]
rs2570224	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2570228	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs2570238	0.92[EUR][1000 genomes]
rs2570239	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs2570240	0.89[EUR][1000 genomes]
rs2570241	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs2570248	0.93[EUR][1000 genomes]
rs2570258	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs2570263	0.96[EUR][1000 genomes]
rs2570268	0.96[EUR][1000 genomes]
rs2570269	0.95[EUR][1000 genomes]
rs2570271	0.95[EUR][1000 genomes]
rs2570275	0.95[EUR][1000 genomes]
rs2593168	0.97[EUR][1000 genomes]
rs2593170	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes]
rs2593173	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes]
rs2593177	0.95[EUR][1000 genomes]
rs2593179	0.98[EUR][1000 genomes]
rs2593181	0.85[CEU][hapmap]
rs2593182	0.97[EUR][1000 genomes]
rs2593183	0.97[EUR][1000 genomes]
rs2593185	0.83[CEU][hapmap];0.95[EUR][1000 genomes]
rs2593187	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2593188	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs2593194	0.85[EUR][1000 genomes]
rs2593198	0.95[EUR][1000 genomes]
rs2593199	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2593202	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2593204	0.89[EUR][1000 genomes]
rs2623243	0.95[EUR][1000 genomes]
rs2623244	0.95[EUR][1000 genomes]
rs2623255	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs2623266	0.97[EUR][1000 genomes]
rs2623271	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs2623279	0.97[EUR][1000 genomes]
rs2623281	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2623282	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2623283	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2623284	0.97[EUR][1000 genomes]
rs2623285	0.97[EUR][1000 genomes]
rs2623286	0.97[EUR][1000 genomes]
rs2623288	0.96[EUR][1000 genomes]
rs2623289	0.96[EUR][1000 genomes]
rs2912186	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2912187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2912188	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2912189	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2912190	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2916169	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2916170	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2916171	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2916172	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2916175	0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2916176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2916177	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2921951	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2921953	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2921957	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2929422	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2929423	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2929424	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2929425	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2929426	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2929428	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2959285	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959289	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2959291	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2959292	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2959293	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2959295	0.90[ASN][1000 genomes]
rs2959296	0.84[CEU][hapmap]
rs2959298	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959300	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2959302	0.94[EUR][1000 genomes]
rs2959304	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2959305	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2959306	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2959307	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3110551	0.86[EUR][1000 genomes]
rs3110553	0.85[EUR][1000 genomes]
rs34504520	0.86[EUR][1000 genomes]
rs34842090	0.85[EUR][1000 genomes]
rs35270232	0.89[EUR][1000 genomes]
rs35823585	0.89[EUR][1000 genomes]
rs36087956	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3751596	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs3794532	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs3794535	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs4238383	0.88[GIH][hapmap];0.87[TSI][hapmap]
rs4365237	0.83[EUR][1000 genomes]
rs4774602	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs4775983	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs56148956	0.86[EUR][1000 genomes]
rs56185947	0.86[EUR][1000 genomes]
rs62015190	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62016192	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493520	1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs6493521	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6493523	0.88[GIH][hapmap];0.89[TSI][hapmap]
rs6493525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6493526	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67895020	0.84[AMR][1000 genomes]
rs689884	0.84[GIH][hapmap];0.85[TSI][hapmap]
rs7162176	0.81[EUR][1000 genomes]
rs7162554	0.95[EUR][1000 genomes]
rs7162925	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7163541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7164961	0.87[EUR][1000 genomes]
rs7165585	0.83[TSI][hapmap]
rs7170091	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7170910	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7171516	0.87[EUR][1000 genomes]
rs7171796	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7174497	1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs7174808	1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs7175017	0.82[EUR][1000 genomes]
rs7178166	0.83[EUR][1000 genomes]
rs7178561	1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7178776	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7178940	0.87[EUR][1000 genomes]
rs7179599	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7181540	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7181553	0.84[GIH][hapmap];0.83[TSI][hapmap]
rs726158	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs72732914	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8024585	0.88[EUR][1000 genomes]
rs8025069	0.83[EUR][1000 genomes]
rs8026521	0.88[EUR][1000 genomes]
rs8027721	0.81[EUR][1000 genomes]
rs8028486	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8028922	1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs8029036	0.92[EUR][1000 genomes]
rs8033433	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8035126	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8038344	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8040975	0.83[EUR][1000 genomes]
rs8040991	0.93[EUR][1000 genomes]
rs990665	0.97[EUR][1000 genomes]
rs9944235	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1053788	chr15:52223389-52307138	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2959299	SCG3	cis	Frontal Cortex	GTEx
rs2959299	TMOD2	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52179600-52259800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:52193400-52227800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:52193400-52232800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:52193600-52233600	Weak transcription	Fetal Brain Male	brain
5	chr15:52194200-52228200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:52194200-52231600	Weak transcription	Psoas Muscle	Psoas
7	chr15:52194400-52236800	Weak transcription	Fetal Kidney	kidney
8	chr15:52194400-52239000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:52196200-52234000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:52197000-52234200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:52197000-52234800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:52200400-52262200	Weak transcription	Stomach Mucosa	stomach
13	chr15:52201000-52238800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr15:52202000-52230000	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:52204600-52224600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:52204800-52238800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:52210000-52233600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:52210000-52239000	Weak transcription	Colon Smooth Muscle	Colon
19	chr15:52210200-52224200	Strong transcription	A549	lung
20	chr15:52211200-52230400	Weak transcription	K562	blood
21	chr15:52211600-52228800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:52211600-52237600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr15:52211600-52239200	Weak transcription	Right Ventricle	heart
24	chr15:52212400-52241600	Weak transcription	Small Intestine	intestine
25	chr15:52213000-52223400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:52214000-52226200	Weak transcription	Ovary	ovary
27	chr15:52215200-52234000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr15:52215800-52226200	Weak transcription	Fetal Brain Female	brain
29	chr15:52216000-52229600	Weak transcription	Colonic Mucosa	Colon
30	chr15:52216000-52238600	Weak transcription	Pancreas	Pancrea
31	chr15:52216200-52227400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:52216400-52229600	Weak transcription	HSMMtube	muscle
33	chr15:52216400-52234200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:52217000-52223800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr15:52217000-52227200	Weak transcription	Brain Germinal Matrix	brain
36	chr15:52217000-52231600	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:52217200-52226600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:52217200-52227600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr15:52217200-52227800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr15:52217200-52228400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr15:52217200-52231600	Weak transcription	Brain Substantia Nigra	brain
42	chr15:52217200-52238400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:52217200-52238800	Weak transcription	Brain Angular Gyrus	brain
44	chr15:52217600-52234200	Weak transcription	NHLF	lung
45	chr15:52217600-52238800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:52217800-52227800	Weak transcription	Fetal Intestine Large	intestine
47	chr15:52217800-52228000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:52217800-52228200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:52217800-52228600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr15:52217800-52237400	Weak transcription	Aorta	Aorta

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