Variant report

Variant	rs2959848
Chromosome Location	chr15:76355700-76355701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1498195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1498196	0.89[MKK][hapmap]
rs2935983	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955773	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2959847	1.00[ASW][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1617	chr15:76332103-76359435	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76353000-76355800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:76353000-76363000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:76353000-76363800	Weak transcription	Lung	lung
4	chr15:76353000-76364000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:76353200-76357600	Weak transcription	Hela-S3	cervix
6	chr15:76353200-76357800	Weak transcription	Psoas Muscle	Psoas
7	chr15:76353200-76365800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:76353600-76357000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr15:76354400-76357600	Weak transcription	Pancreas	Pancrea
10	chr15:76355000-76358000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:76355600-76355800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:76355600-76355800	Enhancers	Right Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links