The 2.0 version of rSNPBase

Variant report

Variant rs2960000
Chromosome Location chr17:43534353-43534354
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43510200-43548200 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr17:43510400-43539200 Weak transcription Osteobl bone
3 chr17:43510800-43567200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr17:43515600-43539200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr17:43515600-43549600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr17:43517000-43549800 Weak transcription Left Ventricle heart
7 chr17:43518000-43552600 Weak transcription Cortex derived primary cultured neurospheres brain
8 chr17:43518200-43539000 Weak transcription A549 lung
9 chr17:43518200-43548600 Weak transcription Fetal Kidney kidney
10 chr17:43518200-43552200 Weak transcription Rectal Smooth Muscle rectum
11 chr17:43518400-43538600 Weak transcription Hela-S3 cervix
12 chr17:43518400-43538800 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr17:43518400-43549600 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr17:43519600-43564600 Weak transcription HSMMtube muscle
15 chr17:43523000-43567200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr17:43523800-43546400 Weak transcription Pancreas Pancrea
17 chr17:43523800-43560000 Weak transcription NHDF-Ad bronchial
18 chr17:43524000-43539200 Weak transcription NH-A brain
19 chr17:43524400-43567000 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr17:43525000-43539400 Weak transcription HSMM muscle
21 chr17:43525400-43535800 Strong transcription Fetal Stomach stomach
22 chr17:43525800-43535200 Strong transcription Primary neutrophils fromperipheralblood blood
23 chr17:43525800-43538800 Weak transcription HUVEC blood vessel
24 chr17:43526000-43535000 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr17:43526000-43537400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr17:43526200-43534600 Strong transcription Primary monocytes fromperipheralblood blood
27 chr17:43526800-43534400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr17:43527200-43534400 Strong transcription Lung lung
29 chr17:43527400-43537600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr17:43527600-43556800 Weak transcription Fetal Lung lung
31 chr17:43527800-43539200 Weak transcription NHLF lung
32 chr17:43527800-43546000 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr17:43528000-43544800 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr17:43528200-43545200 Weak transcription Primary T cells from cord blood blood
35 chr17:43529000-43541400 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr17:43529000-43560000 Weak transcription Primary hematopoietic stem cells blood
37 chr17:43529000-43566600 Weak transcription Colon Smooth Muscle Colon
38 chr17:43529600-43534400 Strong transcription Spleen Spleen
39 chr17:43529800-43534800 Strong transcription Fetal Adrenal Gland Adrenal Gland
40 chr17:43530200-43534800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr17:43530400-43534400 Strong transcription Fetal Thymus thymus
42 chr17:43530400-43535800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr17:43530400-43536200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
44 chr17:43530600-43539000 Weak transcription GM12878-XiMat blood
45 chr17:43530800-43536200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
46 chr17:43530800-43538600 Weak transcription Primary B cells from cord blood blood
47 chr17:43530800-43545400 Weak transcription Dnd41 blood
48 chr17:43531000-43534400 Strong transcription Primary hematopoietic stem cells short term culture blood
49 chr17:43531000-43534400 Strong transcription Primary T helper naive cells fromperipheralblood blood
50 chr17:43531000-43534400 Strong transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015