Variant report

Variant	rs29658
Chromosome Location	chr5:151410888-151410889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs153529	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs153952	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153953	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs154113	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs159807	0.82[AFR][1000 genomes]
rs159808	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159811	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159812	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs159814	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159923	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs159930	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159934	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1662204	0.89[ASN][1000 genomes]
rs194270	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs22047	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs255468	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs255470	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255475	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs255476	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255502	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255503	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255504	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29659	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29660	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs302388	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs371783	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs39787	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs413125	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs42387	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs445996	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs446480	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs447793	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs707164	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs804761	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020223	chr5:151383539-151417923	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs29658	ABLIM3	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151408000-151411200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:151409600-151411200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:151409800-151411400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr5:151409800-151411400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:151410000-151411000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr5:151410000-151411400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:151410000-151411400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr5:151410200-151411200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr5:151410200-151411200	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links