Variant report

Variant rs2966465
Chromosome Location chr2:55510627-55510628
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55501000-55517000 Weak transcription Hela-S3 cervix
2 chr2:55508800-55510800 Active TSS Brain Dorsolateral Prefrontal Cortex brain
3 chr2:55508800-55510800 Active TSS Rectal Smooth Muscle rectum
4 chr2:55508800-55511000 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
5 chr2:55508800-55511000 Active TSS Right Atrium heart
6 chr2:55508800-55511400 Active TSS Skeletal Muscle Female skeletal muscle
7 chr2:55509000-55541200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr2:55509200-55511000 Active TSS Stomach Smooth Muscle stomach
9 chr2:55509400-55515600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr2:55509400-55545200 Weak transcription ES-WA7 Cell Line embryonic stem cell
11 chr2:55509600-55511000 Flanking Active TSS Adipose Nuclei Adipose
12 chr2:55509600-55511200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr2:55509600-55522600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr2:55509800-55514600 Weak transcription iPS-18 Cell Line embryonic stem cell
15 chr2:55509800-55518600 Weak transcription HMEC breast
16 chr2:55509800-55521800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr2:55510000-55510800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
18 chr2:55510000-55511000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
19 chr2:55510000-55511000 Enhancers Primary T killer naive cells fromperipheralblood blood
20 chr2:55510000-55511000 Enhancers Spleen Spleen
21 chr2:55510000-55511200 Enhancers Primary B cells from peripheral blood blood
22 chr2:55510000-55511200 Enhancers Fetal Heart heart
23 chr2:55510000-55511800 Weak transcription Gastric stomach
24 chr2:55510000-55512600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr2:55510000-55513600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr2:55510000-55514400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr2:55510000-55515400 Weak transcription Brain Substantia Nigra brain
28 chr2:55510000-55516200 Weak transcription Fetal Lung lung
29 chr2:55510000-55518800 Weak transcription Brain Angular Gyrus brain
30 chr2:55510000-55521600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr2:55510000-55521600 Weak transcription Brain Cingulate Gyrus brain
32 chr2:55510000-55521800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr2:55510000-55521800 Weak transcription Fetal Brain Male brain
34 chr2:55510000-55521800 Weak transcription NHEK skin
35 chr2:55510000-55522000 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr2:55510000-55522200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
37 chr2:55510000-55522200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr2:55510000-55522400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr2:55510000-55522400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
40 chr2:55510000-55522600 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr2:55510000-55541600 Weak transcription Esophagus oesophagus
42 chr2:55510000-55553600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr2:55510000-55578800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
44 chr2:55510200-55510800 Enhancers Primary neutrophils fromperipheralblood blood
45 chr2:55510200-55510800 Enhancers Brain Anterior Caudate brain
46 chr2:55510200-55510800 Active TSS Skeletal Muscle Male skeletal muscle
47 chr2:55510200-55510800 Enhancers Osteobl bone
48 chr2:55510200-55511000 Active TSS H1 Cell Line embryonic stem cell
49 chr2:55510200-55511000 Enhancers HUES48 Cell Line embryonic stem cell
50 chr2:55510200-55511000 Enhancers Primary T cells fromperipheralblood blood

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