Variant report

Variant	rs2967497
Chromosome Location	chr19:36907654-36907655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2967525	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2967526	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1066026	chr19:36878441-36947928	ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1067101	chr19:36901010-36956251	ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36882200-36908800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:36885600-36908000	Weak transcription	K562	blood
3	chr19:36889800-36908200	Weak transcription	HepG2	liver
4	chr19:36891800-36908200	Weak transcription	Fetal Heart	heart
5	chr19:36891800-36908200	Weak transcription	Hela-S3	cervix
6	chr19:36895000-36908200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr19:36896600-36908200	Weak transcription	Right Ventricle	heart
8	chr19:36896600-36908400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr19:36897200-36908200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr19:36898400-36908600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr19:36899000-36908200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr19:36899200-36908400	Weak transcription	NH-A	brain
13	chr19:36899800-36908200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr19:36900000-36908200	Weak transcription	HUVEC	blood vessel
15	chr19:36900400-36908200	Weak transcription	Brain Substantia Nigra	brain
16	chr19:36900400-36908400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr19:36900600-36908000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr19:36900800-36908200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr19:36900800-36908400	Weak transcription	Small Intestine	intestine
20	chr19:36901000-36908000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr19:36901000-36908000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr19:36901000-36908400	Weak transcription	Fetal Kidney	kidney
23	chr19:36901000-36908400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr19:36901000-36908400	Weak transcription	HSMMtube	muscle
25	chr19:36901200-36908000	Weak transcription	Brain Hippocampus Middle	brain
26	chr19:36901200-36908000	Weak transcription	Colon Smooth Muscle	Colon
27	chr19:36901200-36908200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr19:36901200-36908200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr19:36901200-36908200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr19:36901200-36908200	Weak transcription	Thymus	Thymus
31	chr19:36901200-36908400	Weak transcription	Colonic Mucosa	Colon
32	chr19:36901200-36908400	Weak transcription	Pancreas	Pancrea
33	chr19:36901200-36908400	Weak transcription	NHDF-Ad	bronchial
34	chr19:36901400-36908200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr19:36901400-36908200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr19:36901400-36908400	Weak transcription	Placenta	Placenta
37	chr19:36901800-36908400	Weak transcription	Left Ventricle	heart
38	chr19:36903800-36908000	Weak transcription	Adipose Nuclei	Adipose
39	chr19:36903800-36908200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr19:36903800-36908600	Weak transcription	Aorta	Aorta
41	chr19:36904000-36908000	Weak transcription	Brain Anterior Caudate	brain
42	chr19:36904000-36908000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr19:36904000-36908000	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr19:36904000-36908200	Weak transcription	Brain Angular Gyrus	brain
45	chr19:36904000-36908200	Weak transcription	HSMM	muscle
46	chr19:36904200-36908000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr19:36904200-36908200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr19:36904200-36908200	Weak transcription	Fetal Brain Male	brain
49	chr19:36904200-36908200	Weak transcription	Ovary	ovary
50	chr19:36904200-36908200	Weak transcription	Psoas Muscle	Psoas

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