Variant report

Variant	rs2967525
Chromosome Location	chr19:36904064-36904065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10402405	0.81[ASN][1000 genomes]
rs10426014	0.81[ASN][1000 genomes]
rs2385801	0.82[ASN][1000 genomes]
rs2945948	0.82[ASN][1000 genomes]
rs2967497	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2967526	0.98[ASN][1000 genomes]
rs2967543	0.81[ASN][1000 genomes]
rs7246106	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1066026	chr19:36878441-36947928	ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1067101	chr19:36901010-36956251	ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2967525	LOC284412	N/A	lymphoblastoid	RTeQTL
rs2967525	LINC00665	cis	Nerve Tibial	GTEx

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36880400-36904600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr19:36882200-36908800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:36882400-36907600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:36882600-36904200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:36883000-36905200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
6	chr19:36885600-36908000	Weak transcription	K562	blood
7	chr19:36889800-36908200	Weak transcription	HepG2	liver
8	chr19:36891000-36904800	Strong transcription	Dnd41	blood
9	chr19:36891800-36908200	Weak transcription	Fetal Heart	heart
10	chr19:36891800-36908200	Weak transcription	Hela-S3	cervix
11	chr19:36895000-36908200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr19:36896600-36908200	Weak transcription	Right Ventricle	heart
13	chr19:36896600-36908400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr19:36897200-36908200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr19:36898400-36904400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
16	chr19:36898400-36904600	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr19:36898400-36904600	ZNF genes & repeats	Liver	Liver
18	chr19:36898400-36906800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr19:36898400-36908600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
20	chr19:36899000-36904400	ZNF genes & repeats	Brain Germinal Matrix	brain
21	chr19:36899000-36908200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr19:36899200-36908400	Weak transcription	NH-A	brain
23	chr19:36899800-36905600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr19:36899800-36908200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr19:36900000-36908200	Weak transcription	HUVEC	blood vessel
26	chr19:36900400-36908200	Weak transcription	Brain Substantia Nigra	brain
27	chr19:36900400-36908400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:36900600-36908000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr19:36900800-36908200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr19:36900800-36908400	Weak transcription	Small Intestine	intestine
31	chr19:36901000-36907400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr19:36901000-36908000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr19:36901000-36908000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr19:36901000-36908400	Weak transcription	Fetal Kidney	kidney
35	chr19:36901000-36908400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr19:36901000-36908400	Weak transcription	HSMMtube	muscle
37	chr19:36901200-36908000	Weak transcription	Brain Hippocampus Middle	brain
38	chr19:36901200-36908000	Weak transcription	Colon Smooth Muscle	Colon
39	chr19:36901200-36908200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr19:36901200-36908200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr19:36901200-36908200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr19:36901200-36908200	Weak transcription	Thymus	Thymus
43	chr19:36901200-36908400	Weak transcription	Colonic Mucosa	Colon
44	chr19:36901200-36908400	Weak transcription	Pancreas	Pancrea
45	chr19:36901200-36908400	Weak transcription	NHDF-Ad	bronchial
46	chr19:36901400-36904200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr19:36901400-36908200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr19:36901400-36908200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr19:36901400-36908400	Weak transcription	Placenta	Placenta
50	chr19:36901800-36908400	Weak transcription	Left Ventricle	heart

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