The 2.0 version of rSNPBase

Variant report

Variant rs2972242
Chromosome Location chr5:80864372-80864373
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80803600-80875200 Weak transcription Fetal Brain Female brain
2 chr5:80825200-80865200 Weak transcription Fetal Brain Male brain
3 chr5:80834400-80867000 Weak transcription Stomach Smooth Muscle stomach
4 chr5:80834800-80866400 Weak transcription Primary B cells from peripheral blood blood
5 chr5:80834800-80870000 Weak transcription Primary T cells fromperipheralblood blood
6 chr5:80835200-80872800 Weak transcription Fetal Kidney kidney
7 chr5:80835200-80875200 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr5:80835600-80876000 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr5:80840800-80883400 Weak transcription HSMM muscle
10 chr5:80840800-80884600 Weak transcription Ovary ovary
11 chr5:80844200-80884600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr5:80846200-80880600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr5:80849000-80885600 Weak transcription Left Ventricle heart
14 chr5:80850800-80866800 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr5:80860200-80878800 Weak transcription Esophagus oesophagus
16 chr5:80860400-80866800 Weak transcription Rectal Smooth Muscle rectum
17 chr5:80861600-80867200 Strong transcription Dnd41 blood
18 chr5:80862000-80864400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr5:80862000-80864800 Strong transcription Thymus Thymus
20 chr5:80862000-80865000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
21 chr5:80862000-80865400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr5:80862200-80864400 Strong transcription Primary T cells from cord blood blood
23 chr5:80862400-80865600 Weak transcription Fetal Muscle Trunk muscle
24 chr5:80862400-80874800 Weak transcription Brain Hippocampus Middle brain
25 chr5:80862800-80878800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr5:80863000-80864600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr5:80863000-80864800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
28 chr5:80863000-80865600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr5:80863400-80865200 Strong transcription Fetal Thymus thymus
30 chr5:80863600-80864600 Weak transcription Aorta Aorta
31 chr5:80863600-80864800 Strong transcription Cortex derived primary cultured neurospheres brain
32 chr5:80863800-80865200 Weak transcription Fetal Muscle Leg muscle
33 chr5:80863800-80866000 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr5:80863800-80867200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr5:80863800-80868800 Weak transcription Fetal Stomach stomach
36 chr5:80863800-80872000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr5:80864000-80864600 Strong transcription Primary T helper cells fromperipheralblood blood
38 chr5:80864200-80864600 Strong transcription Primary B cells from cord blood blood
39 chr5:80864200-80864600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr5:80864200-80864800 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr5:80864200-80870400 Weak transcription Primary hematopoietic stem cells blood
42 chr5:80864200-80886400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
43 chr5:80864200-80894200 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015