Variant report

Variant	rs297450
Chromosome Location	chr5:151482649-151482650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1508767	0.83[EUR][1000 genomes]
rs159576	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1650908	0.83[EUR][1000 genomes]
rs1650909	0.83[EUR][1000 genomes]
rs1650910	0.85[EUR][1000 genomes]
rs1662206	0.83[EUR][1000 genomes]
rs1662207	0.83[EUR][1000 genomes]
rs167221	0.84[EUR][1000 genomes]
rs2562388	0.84[EUR][1000 genomes]
rs2584912	0.83[EUR][1000 genomes]
rs2584913	0.83[EUR][1000 genomes]
rs2584914	0.83[EUR][1000 genomes]
rs2599478	0.83[EUR][1000 genomes]
rs297453	0.84[EUR][1000 genomes]
rs297454	0.84[EUR][1000 genomes]
rs300669	0.83[EUR][1000 genomes]
rs303989	0.83[EUR][1000 genomes]
rs303990	0.83[EUR][1000 genomes]
rs303991	0.83[EUR][1000 genomes]
rs471407	0.84[EUR][1000 genomes]
rs475253	0.84[EUR][1000 genomes]
rs482564	0.83[EUR][1000 genomes]
rs485313	0.83[EUR][1000 genomes]
rs487470	0.83[EUR][1000 genomes]
rs488335	0.83[EUR][1000 genomes]
rs489145	0.83[EUR][1000 genomes]
rs494362	0.84[EUR][1000 genomes]
rs4958292	0.83[EUR][1000 genomes]
rs497988	0.83[EUR][1000 genomes]
rs499767	0.83[EUR][1000 genomes]
rs501708	0.84[EUR][1000 genomes]
rs511292	0.83[EUR][1000 genomes]
rs513050	0.83[EUR][1000 genomes]
rs514032	0.83[EUR][1000 genomes]
rs515833	0.82[EUR][1000 genomes]
rs516675	0.83[EUR][1000 genomes]
rs523609	0.84[EUR][1000 genomes]
rs524587	0.84[EUR][1000 genomes]
rs526435	0.84[EUR][1000 genomes]
rs527312	0.84[EUR][1000 genomes]
rs529108	0.84[EUR][1000 genomes]
rs532857	0.83[EUR][1000 genomes]
rs534607	0.83[EUR][1000 genomes]
rs553933	0.84[EUR][1000 genomes]
rs556591	0.84[EUR][1000 genomes]
rs557546	0.82[EUR][1000 genomes]
rs577045	0.83[EUR][1000 genomes]
rs695205	0.83[EUR][1000 genomes]
rs72492470	0.83[EUR][1000 genomes]
rs804966	0.84[EUR][1000 genomes]
rs891164	0.83[EUR][1000 genomes]
rs9790850	0.86[EUR][1000 genomes]
rs9791102	0.86[EUR][1000 genomes]
rs9791157	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv883039	chr5:151471642-151540888	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151480800-151486200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links