Variant report

Variant	rs29770
Chromosome Location	chr5:97978897-97978898
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs152956	0.83[ASN][1000 genomes]
rs152957	0.83[ASN][1000 genomes]
rs152980	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs152981	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs152982	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs152983	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs152986	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs152987	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs152990	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs171528	0.83[ASN][1000 genomes]
rs193500	0.82[ASN][1000 genomes]
rs251533	0.81[ASN][1000 genomes]
rs251535	0.81[ASN][1000 genomes]
rs25741	0.85[ASN][1000 genomes]
rs25742	0.85[ASN][1000 genomes]
rs25743	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs25744	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs27029	0.82[ASN][1000 genomes]
rs27030	0.81[ASN][1000 genomes]
rs27031	0.94[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap]
rs27738	0.85[ASN][1000 genomes]
rs27786	0.81[ASN][1000 genomes]
rs27870	0.82[ASN][1000 genomes]
rs27971	0.82[ASN][1000 genomes]
rs29661	0.81[ASN][1000 genomes]
rs29670	0.81[ASN][1000 genomes]
rs29671	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs29733	0.85[ASN][1000 genomes]
rs29734	0.85[ASN][1000 genomes]
rs29735	0.85[ASN][1000 genomes]
rs29736	0.85[ASN][1000 genomes]
rs29772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29773	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3099443	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs316508	0.93[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap]
rs36759	0.81[ASN][1000 genomes]
rs36760	0.81[ASN][1000 genomes]
rs36761	0.81[ASN][1000 genomes]
rs36762	0.81[ASN][1000 genomes]
rs36763	0.81[ASN][1000 genomes]
rs3860804	0.94[CHB][hapmap]
rs40263	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs467763	0.81[ASN][1000 genomes]
rs468674	0.94[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs469191	0.82[ASN][1000 genomes]
rs622487	0.81[ASN][1000 genomes]
rs6893541	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv969927	chr5:97976395-97980335	Enhancers Weak transcription Genic enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97974800-97979200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:97975000-97979000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:97976800-97979400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:97976800-97979400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:97978000-97979200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:97978400-97979200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:97978600-97979400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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