Variant report

Variant	rs2978551
Chromosome Location	chr8:62148943-62148944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1599915	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28460733	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2919304	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2919307	0.85[CEU][hapmap]
rs2919309	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2919316	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2919317	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2919318	0.81[AMR][1000 genomes]
rs2919324	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2931287	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2931293	0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs2931296	0.89[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2931297	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2978490	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2978516	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2978518	0.85[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2978523	0.85[CEU][hapmap]
rs2978526	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2978528	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2978549	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2978557	0.82[EUR][1000 genomes]
rs2978559	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs2978560	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2978561	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2978562	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2978563	0.89[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3864675	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3886396	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465698	chr8:62036793-62179465	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611426	chr8:62036793-62179465	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62148200-62149400	Enhancers	Adipose Nuclei	Adipose
2	chr8:62148400-62149000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:62148800-62149200	Enhancers	Fetal Brain Female	brain

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