Variant report

Variant	rs2978837
Chromosome Location	chr8:34154841-34154842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAK16-3	chr8:34154777-34154856	ENSG00000253108

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1551654	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16881977	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2168962	0.96[ASN][1000 genomes]
rs2590469	0.96[ASN][1000 genomes]
rs2590479	0.82[AFR][1000 genomes]
rs2609620	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2609627	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2609633	0.97[ASN][1000 genomes]
rs2609650	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2719277	0.82[AFR][1000 genomes]
rs2719288	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2719305	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2719310	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2719311	0.88[AFR][1000 genomes]
rs2719312	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2719320	0.99[ASN][1000 genomes]
rs2719321	0.99[ASN][1000 genomes]
rs2719322	0.99[ASN][1000 genomes]
rs28404543	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2953926	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953927	0.99[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2953929	1.00[ASN][1000 genomes]
rs2953930	0.98[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2953931	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2953932	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2953934	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2953935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2959322	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2959323	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2959325	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978835	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4739544	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6987252	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs978439	0.82[AFR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34154600-34155000	Enhancers	Rectal Mucosa Donor 29	rectum
2	chr8:34154800-34155200	Enhancers	Sigmoid Colon	Sigmoid Colon

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