Variant report

Variant	rs298853
Chromosome Location	chr13:63812326-63812327
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1097374	1.00[ASN][1000 genomes]
rs1333457	1.00[ASN][1000 genomes]
rs1512877	1.00[ASN][1000 genomes]
rs1604877	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182444	0.93[ASN][1000 genomes]
rs188481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1913174	1.00[ASN][1000 genomes]
rs298763	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298765	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298766	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298776	0.93[ASN][1000 genomes]
rs298781	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298782	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs298784	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298788	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298789	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298790	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs298852	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298870	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs298871	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs298875	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs298876	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs298880	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs298881	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs298883	0.86[EUR][1000 genomes]
rs298884	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs298886	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs298892	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298894	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298895	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs298898	1.00[ASN][1000 genomes]
rs298899	1.00[ASN][1000 genomes]
rs3012179	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095589	0.93[ASN][1000 genomes]
rs3095590	1.00[ASN][1000 genomes]
rs3106412	1.00[ASN][1000 genomes]
rs3106417	1.00[ASN][1000 genomes]
rs3106418	1.00[ASN][1000 genomes]
rs3106423	1.00[ASN][1000 genomes]
rs3119942	0.86[ASN][1000 genomes]
rs3119944	1.00[ASN][1000 genomes]
rs3119947	1.00[ASN][1000 genomes]
rs3119953	1.00[ASN][1000 genomes]
rs3119954	1.00[ASN][1000 genomes]
rs404075	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs419967	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs435653	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs444576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs478952	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs482669	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs494439	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506703	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs539957	0.93[ASN][1000 genomes]
rs576321	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613822	0.88[ASN][1000 genomes]
rs982160	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753514	chr13:63221699-63959299	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv900274	chr13:63511841-63864603	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900275	chr13:63511841-63865669	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1039454	chr13:63545468-63826462	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv541798	chr13:63545468-63826462	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1045647	chr13:63545468-64082080	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv541799	chr13:63545468-64082080	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv900277	chr13:63666149-63892905	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1052016	chr13:63704346-63826462	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv541800	chr13:63704346-63826462	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1039661	chr13:63736333-64287558	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv541801	chr13:63736333-64287558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1040676	chr13:63778306-63837254	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv469654	chr13:63783762-63946116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv482280	chr13:63783762-63946116	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv561901	chr13:63784286-63972811	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv428605	chr13:63801101-63907635	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:63810800-63813200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:63811200-63812400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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