Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10494730	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10754148	0.81[ASN][1000 genomes]
rs10801446	0.81[ASN][1000 genomes]
rs10801447	0.81[ASN][1000 genomes]
rs10921898	0.81[ASN][1000 genomes]
rs10921899	0.81[ASN][1000 genomes]
rs10921904	0.82[ASN][1000 genomes]
rs10921908	0.81[ASN][1000 genomes]
rs10921913	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12029959	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12035482	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12085765	0.88[ASN][1000 genomes]
rs1576765	0.81[ASN][1000 genomes]
rs2225518	0.81[EUR][1000 genomes]
rs2895786	0.81[ASN][1000 genomes]
rs2942922	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2989977	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2989978	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2989980	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3010166	0.87[EUR][1000 genomes]
rs4010	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv998365	chr1:195755734-195779949	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3417502	chr1:195757770-195758307	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195755600-195759800	Weak transcription	Fetal Lung	lung
2	chr1:195756400-195759800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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