Variant report

Variant	rs2994341
Chromosome Location	chr7:57886071-57886072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr7:57886058-57886221	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000231484	TF binding region
ENSG00000231232	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607048	chr7:57190580-58018981	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
2	esv2761119	chr7:57190580-58019970	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1017499	chr7:57253403-57886151	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv538871	chr7:57253403-57886151	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
5	nsv1029476	chr7:57260920-58019983	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
6	esv2752161	chr7:57275833-57919980	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
7	nsv1030441	chr7:57288140-58019983	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
8	nsv1020184	chr7:57318828-58019983	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
9	nsv1015195	chr7:57334076-58019983	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
10	nsv1019359	chr7:57473854-58019983	Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	esv2752832	chr7:57476143-57919943	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
12	esv2752162	chr7:57476164-57919980	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
13	esv2758611	chr7:57586049-57959574	ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	esv2759532	chr7:57586049-57959574	Bivalent/Poised TSS ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
15	nsv1024942	chr7:57586049-58019983	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
16	nsv433384	chr7:57633285-58029051	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
17	nsv520877	chr7:57639830-57886384	Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	21 gene(s)	inside rSNPs	diseases
18	nsv1025576	chr7:57697923-58019983	Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	20 gene(s)	inside rSNPs	diseases
19	nsv1023594	chr7:57721276-58019983	ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
20	nsv981487	chr7:57740775-57932576	ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
21	nsv1016501	chr7:57780599-58019983	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
22	nsv1016244	chr7:57783619-58019983	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
23	nsv818507	chr7:57789531-57886384	Active TSS ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv1023283	chr7:57800875-57950919	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
25	nsv1033455	chr7:57800875-58019983	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
26	nsv1017454	chr7:57819767-58019983	ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
27	nsv1025944	chr7:57829001-57924987	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
28	nsv1023705	chr7:57832030-57914385	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
29	nsv442050	chr7:57840043-57923947	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
30	nsv1026010	chr7:57855143-58019983	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
31	nsv1034211	chr7:57855144-58019983	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
32	nsv1032446	chr7:57855343-58019983	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
33	nsv818508	chr7:57868103-57886384	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
34	nsv8099	chr7:57876606-57914599	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
35	nsv981640	chr7:57877289-57886768	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
36	esv3366330	chr7:57877410-57920608	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
37	esv20635	chr7:57881957-57914393	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
38	nsv821177	chr7:57881957-57914393	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
39	esv3420596	chr7:57883010-57925508	Active TSS ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
40	esv3405232	chr7:57883610-57895808	Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
41	esv3417030	chr7:57883710-57895808	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
42	esv3323111	chr7:57883710-57920508	Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
43	esv3333595	chr7:57883710-57920608	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
44	nsv1016844	chr7:57885901-58019983	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
45	nsv1029423	chr7:57885902-58019983	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:57885400-57886600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr7:57885400-57886600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:57885400-57886800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr7:57885800-57886800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
5	chr7:57886000-57886400	ZNF genes & repeats	Esophagus	oesophagus
6	chr7:57886000-57886400	ZNF genes & repeats	Pancreas	Pancrea
7	chr7:57886000-57886600	ZNF genes & repeats	Gastric	stomach
8	chr7:57886000-57886800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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