Variant report

Variant	rs2995558
Chromosome Location	chr1:224183599-224183600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FBXO28-1	chr1:224183597-224183703	NONHSAT009761

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757772	chr1:223935220-224363163	Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759000	chr1:223935220-224363163	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv873215	chr1:224075483-224204433	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv873216	chr1:224075483-224230307	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1802502	chr1:224076065-224184733	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv427941	chr1:224085052-224363163	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv873217	chr1:224089383-224190316	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv873218	chr1:224097155-224204433	Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv873219	chr1:224097155-224216822	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv873220	chr1:224097155-224223659	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv549241	chr1:224103992-224216757	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv873221	chr1:224115297-224183599	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv549242	chr1:224115297-224203918	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	nsv549243	chr1:224115297-224216757	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv945316	chr1:224133366-224196526	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	nsv549244	chr1:224183599-224202820	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv549245	chr1:224183599-224203686	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv549246	chr1:224183599-224203833	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv549247	chr1:224183599-224203918	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv549248	chr1:224183599-224216757	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv549249	chr1:224183599-224216822	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224181200-224185600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr1:224181200-224199200	Weak transcription	Brain Substantia Nigra	brain
3	chr1:224181400-224186800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:224181400-224199200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:224181600-224187000	Weak transcription	Fetal Lung	lung
6	chr1:224181600-224192000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:224181600-224192000	Weak transcription	K562	blood
8	chr1:224181600-224192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:224181600-224192400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:224181600-224192400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:224181600-224193600	Weak transcription	Fetal Brain Female	brain
12	chr1:224181600-224195000	Weak transcription	HSMM	muscle
13	chr1:224181600-224195400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr1:224181600-224195800	Weak transcription	HSMMtube	muscle
15	chr1:224181600-224196400	Weak transcription	Fetal Intestine Large	intestine
16	chr1:224181600-224196400	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:224181600-224196400	Weak transcription	A549	lung
18	chr1:224181600-224199000	Weak transcription	Fetal Stomach	stomach
19	chr1:224181600-224199200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr1:224181600-224199200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:224181600-224199200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr1:224181600-224199200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr1:224181600-224199200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:224181600-224199200	Weak transcription	Colon Smooth Muscle	Colon
25	chr1:224181600-224199400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:224181600-224199400	Weak transcription	NH-A	brain
27	chr1:224181800-224185600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr1:224181800-224186400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr1:224181800-224186800	Weak transcription	Primary B cells from cord blood	blood
30	chr1:224181800-224191600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:224181800-224192000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr1:224181800-224192000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr1:224181800-224192600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:224181800-224192600	Weak transcription	Liver	Liver
35	chr1:224181800-224195200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr1:224181800-224195600	Weak transcription	Fetal Intestine Small	intestine
37	chr1:224181800-224196600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr1:224181800-224197800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:224181800-224199200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr1:224181800-224199200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:224181800-224199200	Weak transcription	Primary hematopoietic stem cells	blood
42	chr1:224181800-224199200	Weak transcription	Adipose Nuclei	Adipose
43	chr1:224181800-224199200	Weak transcription	Brain Anterior Caudate	brain
44	chr1:224181800-224199200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr1:224181800-224199200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr1:224181800-224199200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr1:224181800-224199200	Weak transcription	Fetal Kidney	kidney
48	chr1:224181800-224199200	Weak transcription	Ovary	ovary
49	chr1:224181800-224199200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr1:224181800-224199200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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