Variant report
Variant | rs3003126 |
---|---|
Chromosome Location | chr1:225236823-225236824 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11588063 | 0.82[AFR][1000 genomes] |
rs1395116 | 0.83[AFR][1000 genomes] |
rs1506073 | 0.82[AFR][1000 genomes] |
rs1847909 | 0.82[AFR][1000 genomes] |
rs2128269 | 0.83[AFR][1000 genomes] |
rs2170109 | 0.80[AFR][1000 genomes] |
rs2449279 | 0.89[AFR][1000 genomes] |
rs2449301 | 0.98[AFR][1000 genomes] |
rs2449303 | 0.83[AFR][1000 genomes] |
rs2449305 | 0.98[AFR][1000 genomes] |
rs2449306 | 0.98[AFR][1000 genomes] |
rs2449307 | 0.83[AFR][1000 genomes] |
rs2449308 | 0.83[AFR][1000 genomes] |
rs2456328 | 0.83[AFR][1000 genomes] |
rs2456344 | 0.98[AFR][1000 genomes] |
rs2456350 | 0.98[AFR][1000 genomes] |
rs2456351 | 0.82[AFR][1000 genomes] |
rs2456354 | 0.98[AFR][1000 genomes] |
rs2501086 | 0.81[AFR][1000 genomes] |
rs2501103 | 0.98[AFR][1000 genomes] |
rs2501107 | 0.83[AFR][1000 genomes] |
rs2501108 | 0.83[AFR][1000 genomes] |
rs2501112 | 0.98[AFR][1000 genomes] |
rs2802734 | 0.84[AFR][1000 genomes] |
rs3101906 | 0.80[AFR][1000 genomes] |
rs3102108 | 0.82[AFR][1000 genomes] |
rs3102109 | 0.81[AFR][1000 genomes] |
rs3102110 | 0.82[AFR][1000 genomes] |
rs3102112 | 0.82[AFR][1000 genomes] |
rs3102113 | 0.82[AFR][1000 genomes] |
rs3102116 | 0.82[AFR][1000 genomes] |
rs3105551 | 0.82[AFR][1000 genomes] |
rs3105552 | 0.82[AFR][1000 genomes] |
rs3105553 | 0.80[AFR][1000 genomes] |
rs3105554 | 0.82[AFR][1000 genomes] |
rs3105556 | 0.82[AFR][1000 genomes] |
rs3105558 | 0.82[AFR][1000 genomes] |
rs3105559 | 0.82[AFR][1000 genomes] |
rs3105560 | 0.82[AFR][1000 genomes] |
rs3105561 | 0.82[AFR][1000 genomes] |
rs3105562 | 0.82[AFR][1000 genomes] |
rs3105563 | 0.82[AFR][1000 genomes] |
rs3105566 | 0.82[AFR][1000 genomes] |
rs3105568 | 0.80[AFR][1000 genomes] |
rs3105569 | 0.80[AFR][1000 genomes] |
rs3120990 | 0.82[AFR][1000 genomes] |
rs3128643 | 0.82[AFR][1000 genomes] |
rs3128644 | 0.82[AFR][1000 genomes] |
rs3128646 | 0.82[AFR][1000 genomes] |
rs3128649 | 0.82[AFR][1000 genomes] |
rs3128650 | 0.82[AFR][1000 genomes] |
rs3128651 | 0.80[AFR][1000 genomes] |
rs3128652 | 0.82[AFR][1000 genomes] |
rs3128653 | 0.82[AFR][1000 genomes] |
rs3128656 | 0.82[AFR][1000 genomes] |
rs3128658 | 0.82[AFR][1000 genomes] |
rs3128660 | 0.82[AFR][1000 genomes] |
rs3128662 | 0.82[AFR][1000 genomes] |
rs981067 | 0.83[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2757773 | chr1:225087924-225253274 | Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
2 | esv2759001 | chr1:225087924-225253274 | Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
3 | esv3438976 | chr1:225133567-225248753 | Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv873225 | chr1:225162060-225373936 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv549262 | chr1:225191852-225319898 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | nsv549263 | chr1:225202426-225319898 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv998899 | chr1:225210813-225496353 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
8 | nsv1004856 | chr1:225228287-225271137 | Weak transcription ZNF genes & repeats Strong transcription Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
9 | nsv526708 | chr1:225229866-225273248 | ZNF genes & repeats Weak transcription Strong transcription Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
10 | esv1808493 | chr1:225232264-225267066 | Weak transcription ZNF genes & repeats Enhancers Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:225215600-225242200 | Weak transcription | Primary hematopoietic stem cells | blood |
2 | chr1:225227000-225238400 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
3 | chr1:225227000-225240200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |