Variant report

Variant	rs300901
Chromosome Location	chr4:144237547-144237548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144235945..144238860-chr4:144239571..144241521,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10012713	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1027851	0.82[JPT][hapmap]
rs11100788	0.81[JPT][hapmap]
rs11947952	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13123498	0.83[JPT][hapmap]
rs1472873	0.83[JPT][hapmap]
rs1510880	0.83[JPT][hapmap]
rs2013856	0.87[ASN][1000 genomes]
rs2055730	0.83[JPT][hapmap]
rs300890	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs300891	0.96[ASN][1000 genomes]
rs300892	0.95[ASN][1000 genomes]
rs300893	0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs300894	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs300895	0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs300899	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs300902	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300903	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs300904	0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs300905	0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs300910	0.82[ASN][1000 genomes]
rs300911	0.89[JPT][hapmap]
rs300912	0.89[JPT][hapmap]
rs300913	0.91[CEU][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs300914	0.91[CEU][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs300915	0.91[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs300917	0.91[CEU][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs300918	0.82[ASN][1000 genomes]
rs300919	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs300943	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs300946	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs300947	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs300949	0.82[EUR][1000 genomes]
rs300951	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs300953	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3792652	0.83[JPT][hapmap]
rs3805247	0.82[JPT][hapmap]
rs3805249	0.83[JPT][hapmap]
rs3805251	0.81[JPT][hapmap]
rs3805253	0.83[JPT][hapmap]
rs3805254	0.83[JPT][hapmap]
rs3805256	0.83[JPT][hapmap]
rs3805257	0.83[JPT][hapmap]
rs3828512	0.83[JPT][hapmap]
rs3828513	0.83[JPT][hapmap]
rs476417	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs568685	0.94[ASN][1000 genomes]
rs592349	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62337488	0.96[ASN][1000 genomes]
rs624170	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs624189	0.96[ASN][1000 genomes]
rs6537155	0.83[JPT][hapmap]
rs666542	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs713140	0.83[JPT][hapmap]
rs719392	0.83[JPT][hapmap]
rs7680959	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144235000-144247000	Weak transcription	Right Atrium	heart
2	chr4:144235600-144238400	Weak transcription	Fetal Heart	heart
3	chr4:144235600-144241000	Weak transcription	Left Ventricle	heart
4	chr4:144237400-144239000	Enhancers	Colon Smooth Muscle	Colon
5	chr4:144237400-144239000	Enhancers	Rectal Smooth Muscle	rectum

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