Variant report

Variant	rs3010154
Chromosome Location	chr1:195877970-195877971
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1376806	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1376807	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1376809	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1562945	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1562946	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1562947	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17633002	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1869041	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1975680	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2167515	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2167516	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2334796	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2334902	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2923872	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2923885	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3008555	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3008556	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3008557	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3008558	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3008562	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3008574	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3010145	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3010153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34940267	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9427620	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs983647	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs983648	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2757765	chr1:195803764-196119454	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2758989	chr1:195803764-196119454	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2756364	chr1:195818443-196020535	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2755652	chr1:195819871-195885825	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2755902	chr1:195819871-196028887	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv872945	chr1:195826738-195881459	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv548721	chr1:195831030-195881459	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv872947	chr1:195832253-195881459	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv525153	chr1:195866450-195930996	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv872948	chr1:195872295-196236425	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv35094	chr1:195874343-196020343	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195876800-195878000	Enhancers	Primary hematopoietic stem cells	blood
2	chr1:195876800-195878000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:195876800-195878400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:195876800-195878400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:195876800-195878400	Enhancers	NHEK	skin
6	chr1:195876800-195878600	Enhancers	HMEC	breast
7	chr1:195877000-195878600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:195877400-195878800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:195877400-195878800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr1:195877600-195878400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:195877600-195878400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:195877600-195878600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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