Variant report

Variant	rs3012182
Chromosome Location	chr1:224952159-224952160
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1436166	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2016652	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2298257	0.86[JPT][hapmap]
rs2501078	0.82[JPT][hapmap]
rs2574874	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2574876	0.87[ASN][1000 genomes]
rs2574877	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2574878	0.82[AMR][1000 genomes]
rs2574879	0.85[ASN][1000 genomes]
rs2662906	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2662907	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2662923	0.85[ASN][1000 genomes]
rs2662924	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2662925	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2662927	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2802552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2802556	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2802558	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2802559	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2802561	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2802562	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2802563	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2802744	0.87[ASN][1000 genomes]
rs2802747	0.82[AMR][1000 genomes]
rs2997478	0.90[ASN][1000 genomes]
rs2997499	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2997501	0.89[ASN][1000 genomes]
rs3012183	0.86[AMR][1000 genomes]
rs3012184	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224944800-224954800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:224948000-224956800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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