Variant report

Variant	rs3012574
Chromosome Location	chr6:74610890-74610891
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12212966	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12528991	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12529606	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1370439	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1837080	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1837081	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2083079	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2083080	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2118334	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2917873	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2917875	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2917877	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2917878	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2917879	0.88[ASN][1000 genomes]
rs2917881	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2917882	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2917888	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2917889	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2917890	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2917891	0.86[EUR][1000 genomes]
rs3005505	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3005520	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3005524	0.87[ASN][1000 genomes]
rs3005528	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3005529	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3005530	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3005532	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3005534	0.82[ASN][1000 genomes]
rs3012568	0.86[EUR][1000 genomes]
rs3012569	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs969732	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv526236	chr6:74563545-74662900	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv14513	chr6:74564769-74614549	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2757177	chr6:74567610-74625056	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759441	chr6:74567610-74625056	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1025650	chr6:74567731-74611185	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv34305	chr6:74571797-74675280	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv508412	chr6:74578788-74634589	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv34860	chr6:74580170-74633611	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1846903	chr6:74580433-74623759	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv5351	chr6:74590127-74643177	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv603724	chr6:74594687-74611542	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1030389	chr6:74606701-74811706	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv14830	chr6:74610209-74646506	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74610600-74611200	ZNF genes & repeats	Placenta	Placenta
2	chr6:74610600-74611200	ZNF genes & repeats	Pancreas	Pancrea

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