Variant report

Variant	rs3016494
Chromosome Location	chr8:107751849-107751850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2346518	0.81[AFR][1000 genomes]
rs2930474	0.82[AFR][1000 genomes]
rs2930475	0.84[AFR][1000 genomes]
rs2930477	0.84[AFR][1000 genomes]
rs2930480	0.81[AFR][1000 genomes]
rs2981236	0.81[AFR][1000 genomes]
rs2981238	0.84[AFR][1000 genomes]
rs2981240	0.82[AFR][1000 genomes]
rs2981241	0.84[AFR][1000 genomes]
rs2981242	0.84[AFR][1000 genomes]
rs2981243	0.84[AFR][1000 genomes]
rs3015947	0.84[AFR][1000 genomes]
rs3110436	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs776947	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107719600-107762400	Weak transcription	Lung	lung
3	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
4	chr8:107719600-107775200	Weak transcription	Gastric	stomach
5	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
6	chr8:107719800-107753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:107738000-107755400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:107738600-107755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:107738600-107755400	Weak transcription	Fetal Intestine Small	intestine
10	chr8:107738800-107757000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:107739000-107752600	Weak transcription	Fetal Intestine Large	intestine
12	chr8:107739000-107753000	Weak transcription	Colon Smooth Muscle	Colon
13	chr8:107739000-107754200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:107739000-107758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:107739000-107775200	Weak transcription	A549	lung
16	chr8:107739200-107752000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:107739200-107752600	Weak transcription	Fetal Kidney	kidney
18	chr8:107739200-107752600	Weak transcription	Fetal Thymus	thymus
19	chr8:107739200-107753200	Weak transcription	NHLF	lung
20	chr8:107739200-107760800	Weak transcription	Fetal Stomach	stomach
21	chr8:107740000-107756200	Weak transcription	Psoas Muscle	Psoas
22	chr8:107740000-107759600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:107740000-107775200	Weak transcription	Ovary	ovary
24	chr8:107740200-107752400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr8:107740200-107754400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr8:107740200-107755400	Weak transcription	Thymus	Thymus
27	chr8:107740200-107767400	Weak transcription	K562	blood
28	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
29	chr8:107740400-107752600	Weak transcription	Brain Hippocampus Middle	brain
30	chr8:107740400-107755200	Weak transcription	Brain Angular Gyrus	brain
31	chr8:107740800-107775200	Weak transcription	Brain Substantia Nigra	brain
32	chr8:107741000-107768200	Weak transcription	Brain Germinal Matrix	brain
33	chr8:107741600-107754400	Weak transcription	Fetal Brain Female	brain
34	chr8:107746000-107754600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr8:107746800-107752800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr8:107746800-107753400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:107747000-107756000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr8:107747000-107757800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr8:107747000-107768000	Weak transcription	Small Intestine	intestine
40	chr8:107747200-107754400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:107747600-107757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr8:107747800-107752800	Weak transcription	HUVEC	blood vessel
43	chr8:107748600-107754400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr8:107748600-107760400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr8:107748800-107752800	Weak transcription	Stomach Mucosa	stomach
46	chr8:107748800-107754400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr8:107748800-107754600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:107748800-107755400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr8:107749000-107752400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr8:107749000-107752600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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