Variant report

Variant	rs3017309
Chromosome Location	chr11:56855629-56855630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1941048	1.00[AMR][1000 genomes]
rs61364085	1.00[AMR][1000 genomes]
rs61738766	1.00[AMR][1000 genomes]
rs61739878	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56855000-56857200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:56855200-56855800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:56855200-56855800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:56855200-56857400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:56855400-56855800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:56855400-56855800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:56855400-56855800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:56855400-56855800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr11:56855400-56856000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:56855400-56856000	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:56855400-56856000	Enhancers	Fetal Brain Female	brain
12	chr11:56855400-56856000	Enhancers	Fetal Lung	lung
13	chr11:56855600-56855800	Bivalent Enhancer	Brain Hippocampus Middle	brain
14	chr11:56855600-56856600	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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