Variant report

Variant	rs3017577
Chromosome Location	chr11:56952955-56952956
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10792077	0.85[ASN][1000 genomes]
rs11603194	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11603531	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11820215	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1893937	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2077190	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4939113	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs514354	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs567766	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs609763	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs622932	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs948851	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56948200-56959200	Weak transcription	Gastric	stomach
2	chr11:56948400-56959400	Weak transcription	Right Atrium	heart
3	chr11:56948600-56955400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:56948800-56953200	Enhancers	Fetal Brain Male	brain
5	chr11:56948800-56954800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:56949200-56955000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:56949400-56962600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:56950200-56954000	Weak transcription	Lung	lung
9	chr11:56950200-56955200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:56950200-56960400	Weak transcription	Right Ventricle	heart
11	chr11:56950200-56969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:56951600-56954800	Weak transcription	Fetal Stomach	stomach
13	chr11:56952000-56954800	Weak transcription	Spleen	Spleen
14	chr11:56952600-56953000	Weak transcription	Brain Germinal Matrix	brain
15	chr11:56952600-56954000	Weak transcription	Fetal Brain Female	brain
16	chr11:56952600-56967000	Weak transcription	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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