Variant report

Variant	rs3020025
Chromosome Location	chr11:70943302-70943303
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70943023..70946257-chr11:70947740..70949709,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1004872	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372108	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1985681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919720	1.00[ASN][1000 genomes]
rs2919724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2919726	1.00[ASN][1000 genomes]
rs2919727	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919729	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919731	1.00[EUR][1000 genomes]
rs2919740	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[ASN][1000 genomes]
rs2919742	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3020024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020027	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020028	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020032	1.00[ASN][1000 genomes]
rs3133512	1.00[MEX][hapmap]
rs4078937	0.89[ASN][1000 genomes]
rs60796828	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70934000-70954200	Weak transcription	Colonic Mucosa	Colon
2	chr11:70934400-70945600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:70935400-70945600	Weak transcription	Placenta	Placenta
4	chr11:70935400-70949600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:70935400-70950600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:70935600-70947000	Weak transcription	Lung	lung
7	chr11:70935600-70949600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:70935800-70944000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:70935800-70945600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:70935800-70946800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:70935800-70949000	Weak transcription	Gastric	stomach
12	chr11:70935800-70955200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:70936200-70944000	Weak transcription	Liver	Liver
14	chr11:70936200-70952400	Weak transcription	Pancreas	Pancrea
15	chr11:70937200-70945400	Weak transcription	Fetal Intestine Small	intestine
16	chr11:70938800-70944200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:70939000-70949600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:70939200-70951600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:70939400-70943400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:70940400-70943600	Weak transcription	HepG2	liver
21	chr11:70940400-70948400	Weak transcription	A549	lung
22	chr11:70942400-70946600	Weak transcription	Fetal Intestine Large	intestine
23	chr11:70943000-70943400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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