Variant report

Variant	rs3020034
Chromosome Location	chr11:70977541-70977542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:70962632..70965768-chr11:70975886..70980712,5	MCF-7	breast:
2	chr11:70972327..70973953-chr11:70975861..70978606,2	MCF-7	breast:
3	chr11:70977277..70979953-chr11:71011556..71013433,2	MCF-7	breast:
4	chr11:70955660..70957378-chr11:70976779..70978996,2	MCF-7	breast:
5	chr11:70976032..70978746-chr11:71017675..71019773,2	MCF-7	breast:
6	chr11:70977508..70979049-chr11:70991522..70993240,2	MCF-7	breast:
7	chr11:70963222..70964858-chr11:70977224..70979309,2	MCF-7	breast:
8	chr11:70975707..70978964-chr11:70993986..70997364,3	MCF-7	breast:
9	chr11:70976000..70979036-chr11:70993942..70996048,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000162105	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2919699	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2919700	0.84[AFR][1000 genomes]
rs2919701	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3020037	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3133512	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70967400-70978800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:70973400-70979600	Weak transcription	A549	lung
3	chr11:70975600-70978000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr11:70976600-70978000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:70976800-70977800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr11:70976800-70977800	Bivalent Enhancer	Placenta	Placenta
7	chr11:70976800-70978000	Flanking Active TSS	HepG2	liver
8	chr11:70977000-70977800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:70977000-70977800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:70977000-70977800	Enhancers	Stomach Mucosa	stomach
11	chr11:70977000-70978000	Enhancers	Colon Smooth Muscle	Colon
12	chr11:70977000-70978000	Bivalent Enhancer	Fetal Stomach	stomach
13	chr11:70977200-70977600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr11:70977200-70977600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:70977200-70977600	Active TSS	Esophagus	oesophagus
16	chr11:70977200-70977600	Enhancers	Rectal Smooth Muscle	rectum
17	chr11:70977200-70977800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr11:70977200-70977800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr11:70977200-70977800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:70977200-70977800	Enhancers	Duodenum Mucosa	Duodenum
21	chr11:70977200-70977800	Enhancers	Fetal Intestine Large	intestine
22	chr11:70977200-70977800	Enhancers	Fetal Intestine Small	intestine
23	chr11:70977200-70977800	Enhancers	Lung	lung
24	chr11:70977200-70977800	Enhancers	Stomach Smooth Muscle	stomach
25	chr11:70977200-70978000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr11:70977200-70978000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr11:70977400-70977600	Active TSS	NHEK	skin
28	chr11:70977400-70977800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
29	chr11:70977400-70977800	Enhancers	Colonic Mucosa	Colon
30	chr11:70977400-70978000	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr11:70977400-70978200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links