Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70962632..70965768-chr11:70975886..70980712,5	MCF-7	breast:
2	chr11:70980062..70982454-chr11:70995115..70997170,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162105	Chromatin interaction

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2919699	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2919701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020034	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3133512	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70977800-70980800	Weak transcription	Stomach Mucosa	stomach
2	chr11:70977800-70981000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:70977800-70981200	Weak transcription	Colonic Mucosa	Colon
4	chr11:70978000-70980600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:70978000-70980600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:70978000-70980800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:70978000-70981000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:70978600-70980600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:70978600-70981600	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:70978800-70981600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:70979000-70980200	Enhancers	Pancreas	Pancrea
12	chr11:70979200-70980200	Flanking Active TSS	HepG2	liver
13	chr11:70979200-70981400	Enhancers	Fetal Intestine Small	intestine
14	chr11:70979600-70980400	Enhancers	Liver	Liver
15	chr11:70979600-70980600	Weak transcription	HSMM	muscle
16	chr11:70979600-70980600	Weak transcription	HSMMtube	muscle
17	chr11:70979600-70981600	Enhancers	A549	lung
18	chr11:70979800-70981600	Enhancers	Fetal Intestine Large	intestine
19	chr11:70980000-70980200	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr11:70980000-70981400	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr11:70980000-70981600	Enhancers	Muscle Satellite Cultured Cells	--

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