Variant report

Variant	rs3020038
Chromosome Location	chr11:70981047-70981048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70980062..70982454-chr11:70995115..70997170,2	MCF-7	breast:
2	chr11:70980394..70983033-chr11:70991372..70994451,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11603698	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs11604196	0.86[JPT][hapmap]
rs1372108	1.00[CEU][hapmap]
rs2002704	1.00[EUR][1000 genomes]
rs2919702	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919704	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919705	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2919724	1.00[CEU][hapmap]
rs2919740	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2919742	1.00[CEU][hapmap]
rs3133512	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4077232	1.00[EUR][1000 genomes]
rs55796382	1.00[EUR][1000 genomes]
rs56754859	1.00[EUR][1000 genomes]
rs73532310	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70977800-70981200	Weak transcription	Colonic Mucosa	Colon
2	chr11:70978600-70981600	Enhancers	Duodenum Mucosa	Duodenum
3	chr11:70978800-70981600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:70979200-70981400	Enhancers	Fetal Intestine Small	intestine
5	chr11:70979600-70981600	Enhancers	A549	lung
6	chr11:70979800-70981600	Enhancers	Fetal Intestine Large	intestine
7	chr11:70980000-70981400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr11:70980000-70981600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:70980200-70981200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:70980600-70981200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:70980600-70981400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:70980600-70981400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:70980600-70981400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:70980600-70981400	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr11:70980600-70981400	Enhancers	Hela-S3	cervix
16	chr11:70980600-70981400	Flanking Active TSS	HepG2	liver
17	chr11:70980600-70981400	Enhancers	Osteobl	bone
18	chr11:70980600-70981600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:70980600-70981600	Enhancers	Placenta Amnion	Placenta Amnion
20	chr11:70980600-70981600	Enhancers	HSMMtube	muscle
21	chr11:70980600-70981800	Enhancers	HSMM	muscle
22	chr11:70980800-70981200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:70980800-70981200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:70980800-70981400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:70980800-70981600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:70980800-70981600	Enhancers	Stomach Mucosa	stomach
27	chr11:70981000-70981200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:70981000-70981400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:70981000-70981400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:70981000-70981600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:70981000-70981600	Enhancers	NH-A	brain

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